A traditional Japanese temple with red and white structures, surrounded by lush greenery and a crowd of visitors.

Boutique Hotels in Kyoto Prefecture from ₩80,909

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Check availability on Kyoto Prefecture Boutique Hotels

Our top choices for Kyoto Prefecture boutique hotels

A modern bedroom with a large bed, bedside tables, a TV, and a large window with a view.

1. The Screen

The Screen
4.0 star property
Downtown Kyoto
9.4 out of 10, Exceptional, (411 reviews)
"Beautiful hotel located directly across from the National Garden, in a very peaceful part of town. The Design room was gorgeous and spacious and had a lovely view of a series of shrines across the street. Reception was wonderful and allowed me to check in to my room very early, were very welcoming, professional and provided great service - thank you again for the great stay!"
United States
Trinity
The price is ₩176,821
₩213,953 total
Sep 13 - Sep 14
The Screen
A narrow hallway with a bench, a television, and a balcony with a view.

2. Hotel Kanra Kyoto

Hotel Kanra Kyoto
4.0 star property
Shimogyo Ward
9.8 out of 10, Exceptional, (1,001 reviews)
"Amazing hotel!"
United States
Anat
The price is ₩243,218
₩294,294 total
Sep 18 - Sep 19
Hotel Kanra Kyoto
A traditional Japanese building with a tiled roof, a bicycle parked outside, and a potted plant.

3. Gagakuan

Gagakuan
4.0 star property
Shimogyo Ward
10.0 out of 10, Exceptional, (28 reviews)
"Spent four days at Gagakuan, satisfied, although unexpected cold weather even in spring. Late sakura blooming, still managed to view some. Did not follow tour, rather venture on our own. Visited places of interest but unable to cover all due to insufficient time, maybe next time would to come again. "
Malaysia
Tony
Gagakuan
A modern hallway with a wooden wall, a tiled floor, and a framed artwork on the wall.

4. Noku Kyoto

Noku Kyoto
4.0 star property
Downtown Kyoto
9.4 out of 10, Exceptional, (1,000 reviews)
"Nicely located near transportation and sights."
United States
Mary
The price is ₩103,786
₩114,165 total
Sep 15 - Sep 16
Noku Kyoto
A spacious lobby with a wooden ceiling, hexagonal stone flooring, and seating areas labeled "WATER TOWER LOUNGE" and "FRONT DESK."

5. Sakura Terrace The Gallery

Sakura Terrace The Gallery
3.0 star property
Minami Ward
9.2 out of 10, Wonderful, (1,239 reviews)
"Had a pleasant stay, the hotel is close to Kyoto train station and easily walkable. They offer welcome drinks, as well as a drink bar. The rooms are spacious and clean, really enjoyed our stay!"
United Kingdom
Ulrike
The price is ₩113,805
₩137,705 total
Sep 13 - Sep 14
Sakura Terrace The Gallery
A modern hotel entrance with large potted plants, a seating area, and a sign for Villa Sanjo Muramachi in Kyoto.

6. Villa Sanjo Muromachi Kyoto

Villa Sanjo Muromachi Kyoto
4.0 star property
Downtown Kyoto
9.8 out of 10, Exceptional, (311 reviews)
"Love this boutique hotel! Beautiful, clean and quiet with the best bakeries nearby!"
United States
Sara
The price is ₩254,075
₩279,483 total
Sep 17 - Sep 18
Villa Sanjo Muromachi Kyoto
A traditional Japanese garden with a rock arrangement, a stone lantern, and bamboo plants.

7. Mitsui Garden Hotel Kyoto Shinmachi Bettei

Mitsui Garden Hotel Kyoto Shinmachi Bettei
4.0 star property
Downtown Kyoto
9.4 out of 10, Exceptional, (1,002 reviews)
"Helpful and friendly staff, clean rooms, and well located."
Canada
Kurtis
The price is ₩120,763
₩132,839 total
Sep 16 - Sep 17
Mitsui Garden Hotel Kyoto Shinmachi Bettei
A traditional Japanese room with tatami flooring, a low wooden ceiling, and a central table with a chair.

8. Aoi Hotel Kyoto

Aoi Hotel Kyoto
4.0 star property
Shimogyo Ward
9.8 out of 10, Exceptional, (132 reviews)
"Beautiful room and really nice staff."
United States
Julie
Aoi Hotel Kyoto
A hallway with a sign for Kyoto ITOYA hotel.

9. kyoto ITOYA hotel

kyoto ITOYA hotel
3.0 star property
Shimogyo Ward
9.2 out of 10, Wonderful, (482 reviews)
"Everything was wonderful!!"
United States
Bruce
The price is ₩73,554
₩80,909 total
Sep 13 - Sep 14
kyoto ITOYA hotel
A spacious indoor area with large windows, a long sofa, multiple chairs, and tables, providing a view of greenery outside.

10. Hotel The Celestine Kyoto Gion

Hotel The Celestine Kyoto Gion
4.5 star property
Gion
9.6 out of 10, Exceptional, (1,002 reviews)
"Location exceptional, the room was spacious and great onsen on property."
United States
Juan Pablo
The price is ₩379,162
₩438,071 total
Sep 18 - Sep 19
Hotel The Celestine Kyoto Gion
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Kyoto Prefecture Hotel Reviews

Onyado Nono Kyotoshichijo Natural Hot Springs

Onyado Nono Kyotoshichijo Natural Hot Springs

10/10 Excellent
"The only thing that could have been better were the bed sizes. We are a family of 4 I am 6'2 242 lbs and my wife and kids are small in size and height 5ft and under and we barely fit in the 2 beds provided. Other than that this hotel is great and is close to everything. From here we were able to reach all train and bus stops to move freely around Kyoto and there is the main post office nearby at Kyoto station. The onsen was amazing and after a long day of walking it truly relaxes you and sets you up nicely for bed. The sauna is set at 200 degrees Fahrenheit and will really get any impurities out of you so if you do get sick get in there quick. All in all a great stay."
Pedro 6-night trip
Posted 5 hours ago
Onyado Nono Kyotoshichijo Natural Hot Springs