A traditional Japanese temple with red and white structures, surrounded by lush greenery and a crowd of visitors.

Boutique Hotels in Kyoto Prefecture from ₩153,417

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Kyoto Prefecture Boutique Hotels

This weekend
Oct 2 - Oct 4
Next weekend
Oct 9 - Oct 11

Our top choices for Kyoto Prefecture boutique hotels

A modern bedroom with a large bed, bedside tables, a TV, and a large window with a view.

1. The Screen

The Screen
4.0 star property
Downtown Kyoto
9.4 out of 10, Exceptional, (416 reviews)
"Great hotel - spacious room - large very comfortable bed , nice living room area with walk in wardrobe . Breakfast - western or Japanese - was very good , Free drinks in the room - which was great - Nice quiet location . Definitely would recommend it"
United Kingdom
Ajay
The price is ₩212,552
₩257,188 total
Sep 30 - Oct 1
The Screen
A narrow hallway with a bench, a television, and a balcony with a view.

2. Hotel Kanra Kyoto

Hotel Kanra Kyoto
4.0 star property
Shimogyo Ward
9.8 out of 10, Exceptional, (1,002 reviews)
"Beautiful property and great location"
United States
Jill
The price is ₩394,804
₩477,712 total
Sep 29 - Sep 30
Hotel Kanra Kyoto
A traditional Japanese building with a tiled roof, a bicycle parked outside, and a potted plant.

3. Gagakuan

Gagakuan
4.0 star property
Shimogyo Ward
10.0 out of 10, Exceptional, (28 reviews)
"Spent four days at Gagakuan, satisfied, although unexpected cold weather even in spring. Late sakura blooming, still managed to view some. Did not follow tour, rather venture on our own. Visited places of interest but unable to cover all due to insufficient time, maybe next time would to come again. "
Malaysia
Tony
Gagakuan
A modern hallway with a wooden wall, a tiled floor, and a framed artwork on the wall.

4. Noku Kyoto

Noku Kyoto
4.0 star property
Downtown Kyoto
9.4 out of 10, Exceptional, (1,002 reviews)
"Great hotel! We had a short stay in Kyoto but this hotel was comfortable and accommodating. The location was excellent as there was a convenient store nearby. Definitely recommend."
United States
Emma
The price is ₩182,908
₩201,199 total
Sep 28 - Sep 29
Noku Kyoto
A spacious lobby with a wooden ceiling, hexagonal stone flooring, and seating areas labeled "WATER TOWER LOUNGE" and "FRONT DESK."

5. Sakura Terrace The Gallery

Sakura Terrace The Gallery
3.0 star property
Minami Ward
9.2 out of 10, Wonderful, (1,237 reviews)
"Very nice breakfast, stuff are very friendly."
Canada
LU
The price is ₩126,791
₩153,417 total
Sep 28 - Sep 29
Sakura Terrace The Gallery
A modern hotel entrance with large potted plants, a seating area, and a sign for Villa Sanjo Muramachi in Kyoto.

6. Villa Sanjo Muromachi Kyoto

Villa Sanjo Muromachi Kyoto
4.0 star property
Downtown Kyoto
9.8 out of 10, Exceptional, (312 reviews)
"Excellent hotel large rooms for Japan great locations and superb staff will stay again when next in Japan "
United States
Samantha
The price is ₩225,742
₩248,316 total
Sep 29 - Sep 30
Villa Sanjo Muromachi Kyoto
A traditional Japanese garden with a rock arrangement, a stone lantern, and bamboo plants.

7. Mitsui Garden Hotel Kyoto Shinmachi Bettei

Mitsui Garden Hotel Kyoto Shinmachi Bettei
4.0 star property
Downtown Kyoto
9.4 out of 10, Exceptional, (1,009 reviews)
"The hotel is so nice! The staff is so helpful. I had a great experience and would go back!"
United States
Monica
The price is ₩201,561
₩221,717 total
Sep 29 - Sep 30
Mitsui Garden Hotel Kyoto Shinmachi Bettei
A traditional Japanese room with tatami flooring, a low wooden ceiling, and a central table with a chair.

8. Aoi Hotel Kyoto

Aoi Hotel Kyoto
4.0 star property
Shimogyo Ward
9.8 out of 10, Exceptional, (132 reviews)
"Beautiful room and really nice staff."
United States
Julie
The price is ₩525,950
₩636,400 total
Oct 1 - Oct 2
Aoi Hotel Kyoto
A hallway with a sign for Kyoto ITOYA hotel.

9. kyoto ITOYA hotel

kyoto ITOYA hotel
3.0 star property
Shimogyo Ward
9.2 out of 10, Wonderful, (483 reviews)
"Everything was wonderful!!"
United States
Bruce
The price is ₩142,512
₩164,972 total
Sep 30 - Oct 1
kyoto ITOYA hotel
A spacious indoor area with large windows, a long sofa, multiple chairs, and tables, providing a view of greenery outside.

10. Hotel The Celestine Kyoto Gion

Hotel The Celestine Kyoto Gion
4.5 star property
Gion
9.6 out of 10, Exceptional, (1,004 reviews)
"Excellent hotel to stay, staffs are amazingly friendly and helpful, location is great, definitely recommend."
Australia
Xiran
The price is ₩505,977
₩578,468 total
Sep 30 - Oct 1
Hotel The Celestine Kyoto Gion
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free

Top Kyoto Prefecture Hotel Reviews

Hotel Musse Kyoto Shijo Kawaramachi Meitetsu

Hotel Musse Kyoto Shijo Kawaramachi Meitetsu

8/10 Good
"Breakfast buffet was great. Staff was helpful. Room is very small for 3 people, but we made it work. Great area. Lots of shops and restaurants."
Dialixa 2-night trip
Posted 5 hours ago
Hotel Musse Kyoto Shijo Kawaramachi Meitetsu