A large abstract sculpture with a spiral base in a park.

Find hotels near Shelter Island, San Diego from ₩86,566

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
Nov 6 - Nov 8
In two weeks
Nov 13 - Nov 15

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,704 reviews)
"Very pleasant stay."
United States
Alicia
The price is ₩232,993
₩267,814 total
includes taxes & fees
Nov 15 - Nov 16
Homewood Suites by Hilton San Diego Airport/Liberty Station
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

2. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,738 reviews)
"Love to stay here, very nice accommodations, quiet, great service, the airport shuttle very convenient."
United States
MANUEL
The price is ₩195,802
₩225,064 total
includes taxes & fees
Nov 22 - Nov 23
Hampton Inn & Suites San Diego Airport Liberty Station
A balcony with a table set for two, overlooking a marina with numerous boats.

3. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (4,053 reviews)
"Beautiful, clean hotel and friendly staff!!"
United States
Robin
The price is ₩202,898
₩233,219 total
includes taxes & fees
Nov 2 - Nov 3
Bay Club Hotel & Marina
A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

4. Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,243 reviews)
"I have stayed there before. Very comfortable and close to the airport."
United States
Maureen
The price is ₩248,134
₩285,218 total
includes taxes & fees
Nov 8 - Nov 9
Courtyard by Marriott San Diego Airport/Liberty Station
A resort with two-story buildings, balconies, and a pool area.

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (3,159 reviews)
"Nice and brand new hotel, room was really clean, Staff were really nice to us."
United States
Yan
The price is ₩212,103
₩270,478 total
includes taxes & fees
Nov 23 - Nov 24
Humphreys Half Moon Inn
A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

6. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,631 reviews)
"Excellent location, great amenities and easy parking close to room."
Australia
Adam
The price is ₩197,309
₩226,797 total
includes taxes & fees
Nov 22 - Nov 23
Best Western Plus Island Palms Hotel & Marina
An outdoor patio with string lights, tables, chairs, and a bar area with bottles.

7. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,220 reviews)
"Excellent place to stay"
United States
Amos
The price is ₩206,740
₩237,638 total
includes taxes & fees
Nov 29 - Nov 30
Hilton San Diego Airport/Harbor Island
A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
8.8 out of 10, Excellent, (1,004 reviews)
"Such a great place to stay"
United States
Chase
The price is ₩226,910
₩260,821 total
includes taxes & fees
Nov 22 - Nov 23
TownePlace Suites by Marriott San Diego Airport/Liberty Station
A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

9. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (2,104 reviews)
"Clean rooms, great breakfast"
United States
Elizabeth
The price is ₩152,074
₩174,512 total
includes taxes & fees
Nov 9 - Nov 10
Best Western Yacht Harbor Hotel
A building with a sign reading "the Pearl" and a modern architectural style.

10. The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,003 reviews)
"Always enjoy staying at The Pearl"
United States
Jane
The price is ₩182,662
₩206,313 total
includes taxes & fees
Dec 1 - Dec 2
The Pearl Hotel
A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

11. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.4 out of 10, Very good, (1,090 reviews)
"The location is great."
United States
Roxanne
The price is ₩139,254
₩157,009 total
includes taxes & fees
Nov 10 - Nov 11
Sea Harbor Hotel
A square pizza on a wooden board with a fire pit in the background.

12. DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,101 reviews)
"Great location on the water with great views."
Canada
Mike
The price is ₩184,863
₩212,491 total
includes taxes & fees
Nov 22 - Nov 23
DoubleTree by Hilton San Diego Bayside
View from room

13. The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.4 out of 10, Very good, (860 reviews)
"Beautiful place, very clean, Staff very nice"
United States
Deborah
The price is ₩195,802
₩225,065 total
includes taxes & fees
Nov 15 - Nov 16
The Monsaraz San Diego, Tapestry Collection by Hilton
A marina with boats, a yacht, and a balcony with two chairs and a table.

14. Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.3 km from Shelter Island
8.2 out of 10, Very good, (1,002 reviews)
"Would definitely stay here again"
United States
Michael
The price is ₩233,713
₩348,676 total
includes taxes & fees
Nov 29 - Nov 30
Kona Kai San Diego
A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
8.0 out of 10, Very good, (196 reviews)
"Clean room nice staff quiet place overall and in a good area."
United States
Carolina
The price is ₩142,869
₩161,091 total
includes taxes & fees
Nov 22 - Nov 23
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

16. Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,738 reviews)
"Great place! Better location and wonderful Staff"
United States
JJ
The price is ₩123,593
₩139,592 total
includes taxes & fees
Nov 30 - Dec 1
Comfort Inn San Diego Airport At The Harbor
A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

17. Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,003 reviews)
"Property needs upgrades in rooms but the location is great"
United States
Byron
The price is ₩126,995
₩145,727 total
includes taxes & fees
Nov 4 - Nov 5
Ramada by Wyndham San Diego Airport
A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

18. Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.6 out of 10, Good, (519 reviews)
"Quick and easy place to stay before my flight in the morning."
Canada
Clint
The price is ₩111,983
₩134,489 total
includes taxes & fees
Nov 9 - Nov 10
Hotel Point Loma
A modern reception area with a wooden bench and a green hedge.

19. Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,001 reviews)
"Great place to stay. I needed a simple room and bathroom. It was clean, comfortable, the towels were nice and the location was perfect. Enjoyed it!"
United States
Kathryn
The price is ₩101,509
₩114,451 total
includes taxes & fees
Nov 4 - Nov 5
Hotel Aqua Mar
An outdoor patio area with seating arrangements, a pergola, and a green wall.

20. Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (617 reviews)
"Always a great stay!"
United States
Robert
The price is ₩76,644
₩86,566 total
includes taxes & fees
Nov 18 - Nov 19
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,704 reviews
View
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,738 reviews
View
A balcony with a table set for two, overlooking a marina with numerous boats.
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
4,053 reviews
View
A hotel courtyard with outdoor seating, palm trees, and a view of the sea.
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,243 reviews
View
A resort with two-story buildings, balconies, and a pool area.
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
3,159 reviews
View

Top Shelter Island Hotel Reviews

Humphreys Half Moon Inn

Humphreys Half Moon Inn

10/10 Excellent
"It was a lovely anniversary celebration for the couple and they said it was not long enough. Next time they plan to stay longer. Thank you for taking care of M. and S. and helping them celebrate at Humphry's!"
Michael (Mac) 2-night trip
Posted 1 hour ago
Humphreys Half Moon Inn

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, check out the 38 hotels and other accommodations you'll find within a mile.
Where is the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveler data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.
How many hotels will I be able to find near Shelter Island?
Expedia has 38 hotels and other accommodations within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! The majority of hotel room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and be given a refund within 24 hours of your booking. Put your dates in and click on "Search", then use the filter option "fully refundable" to view the top deals on offer near Shelter Island.
Where can I learn more about changing or cancelling my trip in the area near Shelter Island?
For more details about rescheduling or cancelling your stay near Shelter Island, click here.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego, or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse, and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park, and San Diego Civic Theatre.