Top 10 Hotels in Clayton, NY from ₩88,355 - Competitive Prices

A snowy town with a large building complex, a frozen lake, and a snow-covered landscape.

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Our top choices for Clayton hotels

A multi-story hotel with a well-maintained lawn and outdoor seating area.

A lobby with a stone wall, a round table with a vase of flowers, and a chandelier.

A bar area with a sign reading "1000 Islands Bar" and various bottles and glasses.

A lobby with a stone fireplace, wicker furniture, and a chandelier.

1. 1000 Islands Harbor Hotel

Clayton

maria

₩171,138

₩189,963 total

includes taxes & fees

Nov 1 - Nov 2

A wooden-paneled room with two framed pictures of lighthouses, a bed with floral bedding, and wall-mounted lamps.

A room with a view of a green landscape, a wicker chair, a small table with a vase, and a hanging decoration.

A stone building with a steep staircase leading to a door.

A lakeside view with a dock, benches, and a row of houses.

2. Chateau Country Inn

Clayton

Bill

₩149,248

₩165,666 total

includes taxes & fees

Oct 26 - Oct 27

A waterfront hotel with multiple boats docked in front.

A large waterfront hotel with multiple balconies, a marina with boats, and a covered outdoor seating area.

A hotel room with a large bed, a bathroom with a bathtub, a desk, and a TV.

A marina with several boats docked, a clear sky, and a distant shoreline with trees and a castle-like structure.

3. Riveredge Resort

Alexandria Bay Downtown

Bruce

₩131,338

₩145,785 total

includes taxes & fees

Nov 1 - Nov 2

A waterfront property with docked boats, a boathouse, and a large house with a landscaped garden.

A gazebo with a white frame and a dark roof, overlooking a body of water and a distant building.

An indoor swimming pool with multiple lanes, white railings, and hanging pendant lights.

A waterfront property named Bonnie Castle Manor with a large house, a covered patio, and a dock.

4. Bonnie Castle Resort & Marina

Alexandria Bay Downtown

Carol

₩118,072

₩136,367 total

includes taxes & fees

Oct 23 - Oct 24

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

An indoor swimming pool with lounge chairs and a clock on the wall.

5. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Joe

₩145,932

₩161,984 total

includes taxes & fees

Nov 20 - Nov 21

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

A swimming pool with a changing room, sun loungers, and a hot tub area.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

6. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Mark

₩159,994

₩177,594 total

includes taxes & fees

Nov 5 - Nov 6

An aerial view of a coastal residential area with houses, docks, and clear turquoise water.

A kitchen with wooden walls, a granite countertop, and a view of the sea.

A cozy cabin with a wooden interior, a sofa, a small table, and large windows overlooking a body of water.

A wooden interior with large windows overlooking a lake, a round table, and chairs.

7. Angel Rock Waterfront Cottages and Vacation Homes

Cape Vincent

David

₩214,373

₩237,948 total

includes taxes & fees

Oct 26 - Oct 27

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

8. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Yandry

₩126,297

₩140,190 total

includes taxes & fees

Nov 19 - Nov 20

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

A lobby with a reception desk, seating area, and a large potted plant.

A hotel room with a bed, a TV, a desk, and two lamps.

9. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Jiewu

₩135,318

₩150,204 total

includes taxes & fees

Nov 1 - Nov 2

A cozy living room with a floral sofa, a matching ottoman, and a vase of flowers.

A staircase with a wooden handrail and a balustrade, leading to a room with a painting of a cat on the wall and a table lamp.

10. Thousand Island Hart House

Wellesley Island

Elaine

₩265,489

₩294,702 total

includes taxes & fees

Oct 25 - Oct 26

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

A gym with treadmills, elliptical machines, and free weights.

11. Hampton Inn Watertown

Watertown

Joseph

₩119,664

₩132,826 total

includes taxes & fees

Nov 21 - Nov 22

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

A modern building with a covered entrance, multiple windows, and a parking lot.

A reception area with a marble counter, pendant lighting, and a tiled floor.

12. Quality Inn & Suites Watertown Fort Drum

Calcium

Sherry

₩85,542

₩94,952 total

includes taxes & fees

Nov 19 - Nov 20

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A pair of white front-loading washers in a laundry room with a tiled floor.

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

A Days Inn hotel with a two-story structure, a covered entrance, and a parking lot.

13. Days Inn by Wyndham Watertown Fort Drum

Calcium

Jeffrey

₩93,131

₩103,375 total

includes taxes & fees

Nov 1 - Nov 2

A hotel room with two beds, a desk with a coffee maker, a TV, and a view of trees through the window.

A kitchen with open shelves, a microwave, and a toaster.

A gym with treadmills, a weight machine, and a red exercise ball.

A hotel with a prominent "CANDLEWOOD SUITES" sign, a parking lot, and a building with a mix of red and blue facades.

14. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Tara

₩128,685

₩150,137 total

includes taxes & fees

Oct 25 - Oct 26

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

A spacious lobby with high ceilings, large windows, and modern furniture.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

15. Hilton Garden Inn Watertown/Thousand Islands

Watertown

melissa

₩190,043

₩210,948 total

includes taxes & fees

Nov 21 - Nov 22

A hotel room with a bed, a television, a desk, and a window.

A hotel room with a grey sofa, a small white table, a desk with a chair, a blue door, and a wall-mounted artwork.

A gym with various exercise machines, a television, and a green wall.

A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

16. Spark by Hilton Watertown

Watertown

Dianne

₩107,697

₩119,544 total

includes taxes & fees

Oct 29 - Oct 30

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A building with a flat roof and a parking lot in front.

A marina with multiple boats docked, surrounded by trees and a clear sky.

A kitchen with a coffee maker, a fruit bowl, and a bread display.

17. Harbor House Inn

Sackets Harbor

Jeanne

₩235,931

₩274,988 total

includes taxes & fees

Oct 25 - Oct 26

A room with a bed, a chair, a table, and a lamp.

A hotel room with a bed, a desk, a chair, and a small table.

A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.

A motel with a 'Budget' sign, a visible office, and several parked cars.

18. Allen's Budget Motel

Watertown

Robert

₩79,599

₩88,355 total

includes taxes & fees

Oct 25 - Oct 26

A wooden double door with intricate carvings and a sign above stating "ROXY HOTEL EST. 1894".

A hotel corridor with patterned carpet, wooden doors, and beige walls.

A hotel hallway with patterned carpet, wooden doors, and a sofa in the background.

A four-poster bed with a dark wooden frame and intricate carvings, a white bedspread, and several decorative pillows in a bedroom with a large mirror and a bedside table with a lamp.

19. The Roxy Cape Vincent

Cape Vincent

Debra

₩197,724

₩219,474 total

includes taxes & fees

Oct 25 - Oct 26

A building with a balcony overlooking a body of water, surrounded by greenery.

A spacious living area with a wooden floor, a sofa, a dining table, and a bar area with a counter and shelves.

A bar area with a long counter, multiple stools, and shelves stocked with bottles and glasses.

A building with a sign reading "GILLHOUSE" and a stone wall to the left.

20. The GillHouse

Henderson Harbor

James P

₩149,248

₩165,672 total

includes taxes & fees

Oct 23 - Oct 24

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Stay near popular Clayton attractions

Grass Point State Park

This scenic riverside park offers prime fishing spots and waterfront camping along the St. Lawrence River. Enjoy the sandy beach, marina facilities, and family-friendly atmosphere just steps from your tent.

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1000 Islands River Rat Cheese

9.2/10 (78 reviews)

This beloved local shop crafts award-winning New York State cheddars from mild to 20-year aged varieties. Visit on summer weekends to sample their famous squeaky cheese curds, available fresh or fried.

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The Clayton Opera House

8.4/10 (13 reviews)

This historic 1903 venue showcases diverse performances in an intimate setting for 350 guests. Summer evenings offer the fullest calendar of concerts and theatrical events in the Thousand Islands region.

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Thousand Islands Museum

7.8/10 (17 reviews)

This riverside museum chronicles the Thousand Islands' maritime history through artifacts and the Muskie Hall of Fame. Explore the free research library to discover local river communities' fishing heritage.

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Cedar Point State Park

8.4/10 (18 reviews)

Established in 1898, Cedar Point State Park offers a sheltered sandy beach and excellent fishing on the St. Lawrence River. Watch ocean-going freighters from the scenic overlook while enjoying peaceful camping.

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Antique Boat Museum

9.0/10 (72 reviews)

North America's largest freshwater boat collection awaits at this waterfront museum in Clayton. Explore maritime history and tour the opulent 1903 houseboat La Duchesse for an immersive nautical experience.

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C-Way Golf Course

7.2/10 (9 reviews)

This scenic 18-hole course features challenging water hazards and elevated tees overlooking Clayton countryside. Complete your experience at Natali's Restaurant, enjoying Italian dishes above the 9th green.

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Coyote Moon Vineyards

9.0/10 (37 reviews)

This family-owned Thousand Islands winery has earned over 1,000 awards for its cold-hardy grape varieties. Savor premium tastings at their 20-acre vineyard or join a seasonal wine cruise along the St. Lawrence River.

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Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic downtown and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

See all hotels in Clayton

A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Top Clayton Hotel Reviews

Quality Inn & Suites Watertown Fort Drum

8/10 Good

"Nice budget hotel, friendly staff owner involved in making it run smoothly"

Capt. Thomson's Resort

8/10 Good

"Great location, just no breakfast available."

Travel Inn

8/10 Good

"GOOD-Easy parking,fast check in. Comfy bed. BAD- half the lights in the room did not work. TV remote would not advance channels."

Days Inn by Wyndham Watertown Fort Drum

10/10 Excellent

"It was great!"

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Excellent

"Hotel was nice and clean, staff was great when I needed them. Only thing id have to say is the breakfast wasnt the greatest it was nice to have it available"

Ramada by Wyndham Watertown/Thousand Islands NY

10/10 Excellent

"Clean room no rug thats a A plus, parking is no issue"

Chateau Country Inn

10/10 Excellent

"We had a delightful stay! Breakfast and coffee were available everyday. We booked the Boldt Castle River Cruise and it was so convenient to be right there. Our boxed lunch was delicious. The Inn was quiet at night, but there is plenty of room to lounge outside of your room if you wish."

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

8/10 Good

"The EV chargers were not updated"

Hampton Inn Watertown

10/10 Excellent

"Was a very relaxing stay"

More cheap stays in Clayton

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

₩85,542

₩94,952 total

Nov 19 - Nov 20

includes taxes & fees

8.2/10 Very Good! (1,002 reviews)

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

₩93,131

₩103,375 total

Nov 1 - Nov 2

includes taxes & fees

8.8/10 Excellent! (1,000 reviews)

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

₩126,297

₩140,190 total

Nov 19 - Nov 20

includes taxes & fees

8.6/10 Excellent! (1,036 reviews)

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

₩135,318

₩150,204 total

Nov 1 - Nov 2

includes taxes & fees

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY

₩145,932

₩161,984 total

Nov 20 - Nov 21

includes taxes & fees

9.2/10 Wonderful! (1,000 reviews)

Capt.'s Inn & Suites

116 Church Street Alexandria Bay NY

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Frequently asked questions

Where is the best place to stay in Clayton?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and an indoor pool. Other good choices for your visit include West Winds Motel & Cottages and Chateau Country Inn. See all available top hotels, or vacation rentals in Clayton.

If I need to cancel my hotel reservation in Clayton, will I receive a refund?

Yes! Most hotel bookings are fully refundable provided that you cancel prior to the hotel's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.

Where can I learn more about changing or cancelling my trip to Clayton?

To access more information about picking new dates or cancelling your trip to Clayton, go to https://www.expedia.com/service/.

What's the best pet-friendly place to stay in Clayton?

West Winds Motel & Cottages is a top pet-friendly option for your stay. See more pet-friendly hotel accommodations in Clayton.

Where is the best hotel to stay near Coyote Moon Vineyards?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data, and this 3.5-star hotel offers a restaurant and an indoor pool. It's located 3.1 mi (5 km) from Coyote Moon Vineyards. Another good choice is The Clipper Inn, located 2.6 mi (4.2 km) away.

What about the best place to stay close to Clayton Island Tours?

One of the top choices for your stay is 1000 Islands Harbor Hotel, located next to Clayton Island Tours, and this 3.5-star hotel offers a restaurant and an indoor pool. Wooden Boat Inn and The Clipper Inn are two other good options within 5 miles.

What's the best hotel for a golf vacation in Clayton?

Wooden Boat Inn is one of the top choices for golfers based on our travel data. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.

What are some accommodations with pools in Clayton?

1000 Islands Harbor Hotel: Hotel, 1-minute walk from Lake Ontario. Features free self parking, an indoor pool, and complimentary wireless internet access. Another option with an onsite pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.

What's the best place to stay near Macdonald-Cartier International Airport (YOW)?

Fairfield Inn & Suites by Marriott Ottawa Airport is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 0.8 mi (1.3 km) from Macdonald-Cartier Intl. Airport. Other choices close to the airport are Hilton Garden Inn Ottawa Airport and Days Inn by Wyndham Ottawa Airport.

What's it like to stay in Clayton?

Visitors to Clayton are sure to enjoy the riverfront. Tourists can also enjoy so much more including its coffeehouses. In Clayton, there are 114 hotels and other accommodations to choose from. Find out more about Clayton.

What should I do while I'm visiting Clayton?

Cultural venues include Thousand Islands Museum, Antique Boat Museum, and The Clayton Opera House. Natural beauty is on display at Lake Ontario, Grenell Island, and Blind Bay. A couple of additional sights to add to your agenda are 1000 Islands River Rat Cheese and Clayton Marina. Check out what more to see and do in Expedia's Clayton guide.

What's the weather like in Clayton?

The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 26°F. The snowiest months in Clayton are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

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Book Hotels in Clayton on Expedia.com

Find hotels in Clayton, NY from ₩88,355

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Clayton

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Clayton hotels

1. 1000 Islands Harbor Hotel

2. Chateau Country Inn

3. Riveredge Resort

4. Bonnie Castle Resort & Marina

5. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

6. Fairfield Inn & Suites Watertown Thousand Islands

7. Angel Rock Waterfront Cottages and Vacation Homes

8. Comfort Inn & Suites Watertown - 1000 Islands

9. Ramada by Wyndham Watertown/Thousand Islands NY

10. Thousand Island Hart House

11. Hampton Inn Watertown

12. Quality Inn & Suites Watertown Fort Drum

13. Days Inn by Wyndham Watertown Fort Drum

14. Candlewood Suites Watertown Fort Drum by IHG

15. Hilton Garden Inn Watertown/Thousand Islands

16. Spark by Hilton Watertown

17. Harbor House Inn

18. Allen's Budget Motel

19. The Roxy Cape Vincent

20. The GillHouse

Stay near popular Clayton attractions

Grass Point State Park

1000 Islands River Rat Cheese

The Clayton Opera House

Thousand Islands Museum

Cedar Point State Park

Antique Boat Museum

C-Way Golf Course

Coyote Moon Vineyards

Learn more about Clayton

Top Clayton Hotel Reviews

Quality Inn & Suites Watertown Fort Drum

Capt. Thomson's Resort

Travel Inn

Days Inn by Wyndham Watertown Fort Drum

Comfort Inn & Suites Watertown - 1000 Islands

Ramada by Wyndham Watertown/Thousand Islands NY

Chateau Country Inn

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Hampton Inn Watertown

More cheap stays in Clayton

Quality Inn & Suites Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

Comfort Inn & Suites Watertown - 1000 Islands

Ramada by Wyndham Watertown/Thousand Islands NY

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Capt.'s Inn & Suites

Frequently asked questions

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