Top 10 Hotels in Clayton, NY from ₩89,653 - Competitive Prices

A snowy town with a large building complex, a frozen lake, and a snow-covered landscape.

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Our top choices for Clayton hotels

A multi-story hotel with a well-maintained lawn and outdoor seating area.

An outdoor seating area with a fire pit, chairs, and tables.

A lobby with a stone wall, a round table with a vase of flowers, and a chandelier.

A bar area with a sign reading "1000 Islands Bar" and various bottles and glasses.

1. 1000 Islands Harbor Hotel

Clayton

Matthew

₩262,026

₩290,860 total

includes taxes & fees

Sep 7 - Sep 8

A wooden-paneled room with two framed pictures of lighthouses, a bed with floral bedding, and wall-mounted lamps.

A lakeside view with a dock, benches, and a row of houses.

A room with a view of a lake, wicker chairs, a small table, and a basket.

A room with a view of a green landscape, a wicker chair, a small table with a vase, and a hanging decoration.

2. Chateau Country Inn

Clayton

Danny

₩169,614

₩188,273 total

includes taxes & fees

Sep 7 - Sep 8

A wooden deck with a railing overlooking a body of water and a distant shoreline.

A cozy living area with a leather sofa, a dining table with chairs, a leather armchair, and a lamp. A ladder is leaning against the wall, and there is a kitchen area visible in the background.

A two-story house with a balcony on the upper floor, a front door, and a staircase leading to the entrance.

A marina with boats docked at wooden piers, calm water, and a distant shoreline.

3. West Winds Motel & Cottages

Clayton

michael

₩94,270

₩104,635 total

includes taxes & fees

Sep 23 - Sep 24

A spacious living room with a wooden ceiling, a fireplace, a television, and a dining area with red chairs and a table.

A wooden deck with a table and striped chairs, surrounded by a white fence and trees.

A hotel room with a wooden floor, a bed with white bedding, a desk with a computer, a chair, and a view of the outdoors through a sliding door.

A cozy living room with a dark grey sofa, patterned cushions, a wooden coffee table, and a star compass wall decoration.

4. Capt.'s Inn & Suites

Alexandria Bay

Greg

₩96,922

₩107,583 total

includes taxes & fees

Sep 13 - Sep 14

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

5. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Krystle

₩135,018

₩149,870 total

includes taxes & fees

Oct 4 - Oct 5

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A swimming pool with a changing room, sun loungers, and a hot tub area.

A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.

6. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Melanie

₩180,275

₩200,105 total

includes taxes & fees

Oct 4 - Oct 5

A room with a bed, a chair, a table, and a lamp.

A motel with a 'Budget' sign, a visible office, and several parked cars.

A bathroom with a bathtub, a shower, and a toilet.

A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.

7. Allen's Budget Motel

Watertown

Robert

₩80,768

₩89,653 total

includes taxes & fees

Sep 10 - Sep 11

A lobby with a reception desk, a red vending machine, a black leather couch, and a patterned floor.

A building entrance with a covered walkway, double doors, and a stone wall on one side.

A vending machine with various snacks and drinks.

8. Travel Inn

Watertown

Trina

₩83,595

₩92,776 total

includes taxes & fees

Oct 1 - Oct 2

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

A reception desk with a "Welcome to Watertown" sign, framed pictures, and a "Hilton Honors" sign.

A gym with treadmills, elliptical machines, and free weights.

9. Hampton Inn Watertown

Watertown

Wanda

₩155,614

₩172,732 total

includes taxes & fees

Oct 4 - Oct 5

A marina with boats docked, a dock extending into the water, and a building with a large water tower in the background.

A marina with boats docked, a grassy area with outdoor seating, and a large industrial building.

A hotel room with a large bed, a separate bathroom with a bathtub, and a vanity with a mirror.

A lakeside property with a dock, boats, and outdoor seating.

10. Otter Creek Inn

Alexandria Bay Downtown

Tom

₩103,653

₩115,055 total

includes taxes & fees

Sep 7 - Sep 8

A view of a large body of water with a historic building in the background.

A reception area with a large ship's wheel, a white counter, and a woman standing behind it.

A hotel room with a large bed, a sofa, a dining table with chairs, and a view of a lake through large windows.

A room with a sofa, a lamp, and a view of the water.

11. Capt. Thomson's Resort

Alexandria Bay Downtown

Luke

₩232,882

₩258,499 total

includes taxes & fees

Sep 7 - Sep 8

A waterfront property with docked boats, a boathouse, and a large house with a landscaped garden.

An indoor swimming pool with multiple lanes, white railings, and hanging pendant lights.

A waterfront property named Bonnie Castle Manor with a large house, a covered patio, and a dock.

A gazebo with a white frame and a dark roof, overlooking a body of water and a distant building.

12. Bonnie Castle Resort & Marina

Alexandria Bay Downtown

Frederick

₩156,152

₩178,713 total

includes taxes & fees

Sep 13 - Sep 14

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

A pair of white front-loading washers in a laundry room with a tiled floor.

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

13. Days Inn by Wyndham Watertown Fort Drum

Calcium

William

₩107,691

₩119,536 total

includes taxes & fees

Oct 4 - Oct 5

A white building with the letters "RL" on the front.

A compact kitchen with white cabinets, a microwave, a coffee maker, and a refrigerator.

A hotel room with two single beds, each with a green and white bedspread, a nightstand with a lamp, and a framed picture on the wall.

A compact kitchen with a microwave, toaster, and sink. There is a dining table with chairs, a black leather sofa, and a small trash bin.

14. Rock Ledge Motel

Alexandria Bay

Ronald

₩101,768

₩112,954 total

includes taxes & fees

Sep 7 - Sep 8

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

A wooden desk with a flat-screen TV, a mirror, and a coffee maker.

A building with a sign reading "Adirondack Efficiencies."

An outdoor patio area with white plastic chairs and a table, surrounded by a wooden deck and a view of a golf course.

15. Adirondack Efficiencies Watertown

Watertown

Kimberley M

₩84,215

₩93,476 total

includes taxes & fees

Sep 25 - Sep 26

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

An indoor swimming pool with lounge chairs and a clock on the wall.

16. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Bridget

₩164,229

₩182,294 total

includes taxes & fees

Sep 13 - Sep 14

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A hotel pool area with multiple hot tubs, a reception desk, and seating areas.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

A covered outdoor seating area with stone pillars, a high-roofed pavilion, and a view of the Hilton Garden Inn hotel in the background.

17. Hilton Garden Inn Watertown/Thousand Islands

Watertown

Jeremy

₩179,912

₩199,704 total

includes taxes & fees

Oct 4 - Oct 5

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A hotel reception area with a white door, a reception desk, and a sign indicating the Royal Inn Office.

A staircase with wooden handrails leading to an upper floor.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

18. Royal Inn Motel

Watertown

Susan

₩83,124

₩92,264 total

includes taxes & fees

Sep 8 - Sep 9

A hotel room with two beds, a desk with a coffee maker, a TV, and a view of trees through the window.

A kitchen with open shelves, a microwave, and a toaster.

A gym with treadmills, a weight machine, and a red exercise ball.

A hotel with a prominent "CANDLEWOOD SUITES" sign, a parking lot, and a building with a mix of red and blue facades.

19. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Vanessa

₩165,575

₩183,788 total

includes taxes & fees

Oct 2 - Oct 3

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A modern building with a covered entrance, multiple windows, and a parking lot.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

20. Quality Inn & Suites Watertown Fort Drum

Calcium

Nicole

₩103,720

₩115,130 total

includes taxes & fees

Oct 6 - Oct 7

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Stay near popular Clayton attractions

Grass Point State Park

This scenic riverside park offers prime fishing spots and waterfront camping along the St. Lawrence River. Enjoy the sandy beach, marina facilities, and family-friendly atmosphere just steps from your tent.

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1000 Islands River Rat Cheese

9.2/10 (78 reviews)

This beloved local shop crafts award-winning New York State cheddars from mild to 20-year aged varieties. Visit on summer weekends to sample their famous squeaky cheese curds, available fresh or fried.

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Antique Boat Museum

9.0/10 (72 reviews)

North America's largest freshwater boat collection awaits at this waterfront museum in Clayton. Explore maritime history and tour the opulent 1903 houseboat La Duchesse for an immersive nautical experience.

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Thousand Islands Museum

7.8/10 (17 reviews)

This riverside museum chronicles the Thousand Islands' maritime history through artifacts and the Muskie Hall of Fame. Explore the free research library to discover local river communities' fishing heritage.

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The Clayton Opera House

8.4/10 (13 reviews)

This historic 1903 venue showcases diverse performances in an intimate setting for 350 guests. Summer evenings offer the fullest calendar of concerts and theatrical events in the Thousand Islands region.

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Cedar Point State Park

8.4/10 (18 reviews)

Established in 1898, Cedar Point State Park offers a sheltered sandy beach and excellent fishing on the St. Lawrence River. Watch ocean-going freighters from the scenic overlook while enjoying peaceful camping.

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Coyote Moon Vineyards

9.0/10 (37 reviews)

This family-owned Thousand Islands winery has earned over 1,000 awards for its cold-hardy grape varieties. Savor premium tastings at their 20-acre vineyard or join a seasonal wine cruise along the St. Lawrence River.

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C-Way Golf Course

7.2/10 (9 reviews)

This scenic 18-hole course features challenging water hazards and elevated tees overlooking Clayton countryside. Complete your experience at Natali's Restaurant, enjoying Italian dishes above the 9th green.

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Learn more about Clayton

Nestled along the St. Lawrence River, this charming village invites you to explore its historic downtown and scenic waterfront. Cruise the Thousand Islands, visit Boldt Castle on Heart Island, or cast a line for bass in one of Clayton's many fishing spots.

See all hotels in Clayton

A snow-covered town with a mix of residential and commercial buildings, a clear sky, and distant hills.

Top Clayton Hotel Reviews

Hampton Inn Watertown

10/10 Excellent

"Overall very satisfied with the facility. Would not hesitate to stay there again"

Spark by Hilton Watertown

8/10 Good

"Clean room"

Capt. Thomson's Resort

8/10 Good

"Lovely view, great looking room. The WIFI wouldn't work. Kept disconnecting. The smart TV not working wasn't a big deal, but I couldn't get some work done because of it. They really need to install access points."

Chateau Country Inn

10/10 Excellent

"All of the above !!!!!!"

1000 Islands Harbor Hotel

10/10 Excellent

"The staff was so nice and helpful. Will definitely stay again."

Travel Inn

8/10 Good

"Comfy room white sheets bed and clean just really old looking furniture and decor. Needs a little upgrade."

Otter Creek Inn

8/10 Good

"The room was very clean. Bed really comfortable. Nice quiet place with everything you need for a comfortable stay."

Capt.'s Inn & Suites

10/10 Excellent

"I would suggest one or two towel bar. Also one more small tables in the room. The small towel bar was over the toilet so you have no place to hang damp towels. Also only one night stand between beds with a lamp filling the surface. But over all very nice for the price."

Quality Inn & Suites Watertown Fort Drum

8/10 Good

"Could be better, Breakfast was below par"

More cheap stays in Clayton

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

₩94,970

₩105,416 total

Oct 4 - Oct 5

includes taxes & fees

8/10 Very Good! (1,108 reviews)

Capt.'s Inn & Suites

116 Church Street Alexandria Bay NY

₩96,922

₩107,583 total

Sep 13 - Sep 14

includes taxes & fees

8.8/10 Excellent! (1,003 reviews)

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

₩103,720

₩115,130 total

Oct 6 - Oct 7

includes taxes & fees

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

₩107,691

₩119,536 total

Oct 4 - Oct 5

includes taxes & fees

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

₩135,018

₩149,870 total

Oct 4 - Oct 5

includes taxes & fees

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY

₩164,229

₩182,294 total

Sep 13 - Sep 14

includes taxes & fees

Frequently asked questions

Where is the best place to stay in Clayton?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and an indoor pool. Other good choices for your visit include West Winds Motel & Cottages and Chateau Country Inn. See all available top hotels, or vacation rentals in Clayton.

If I need to cancel my hotel reservation in Clayton, will I receive a refund?

Yes! Most hotel bookings are fully refundable provided that you cancel prior to the hotel's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Clayton.

Where can I learn more about changing or cancelling my trip to Clayton?

To access more information about picking new dates or cancelling your trip to Clayton, go to https://www.expedia.com/service/.

What's the best pet-friendly place to stay in Clayton?

West Winds Motel & Cottages is a top pet-friendly option for your stay. See more pet-friendly hotel accommodations in Clayton.

Where is the best hotel to stay near Coyote Moon Vineyards?

1000 Islands Harbor Hotel is one of the top choices for your stay based on our traveler data, and this 3.5-star hotel offers a restaurant and an indoor pool. It's located 3.1 mi (5 km) from Coyote Moon Vineyards. Another good choice is The Clipper Inn, located 2.6 mi (4.2 km) away.

What about the best place to stay close to Clayton Island Tours?

One of the top choices for your stay is 1000 Islands Harbor Hotel, located next to Clayton Island Tours, and this 3.5-star hotel offers a restaurant and an indoor pool. Wooden Boat Inn and The Clipper Inn are two other good options within 5 miles.

What's the best hotel for a golf vacation in Clayton?

Wooden Boat Inn is one of the top choices for golfers based on our travel data. You can tee off at C-Way Golf Course during your trip. See more golf hotels in Clayton.

What are some accommodations with pools in Clayton?

1000 Islands Harbor Hotel: Hotel, 1-minute walk from Lake Ontario. Features free self parking, an indoor pool, and complimentary wireless internet access. Another option with an onsite pool is West Winds Motel & Cottages. View all hotels with pools in Clayton.

What's the best place to stay near Macdonald-Cartier International Airport (YOW)?

Fairfield Inn & Suites by Marriott Ottawa Airport is a popular hotel, featuring free breakfast and an indoor pool. It's located a short 0.8 mi (1.3 km) from Macdonald-Cartier Intl. Airport. Other choices close to the airport are Hilton Garden Inn Ottawa Airport and Days Inn by Wyndham Ottawa Airport.

What's it like to stay in Clayton?

Visitors to Clayton are sure to enjoy the riverfront. Tourists can also enjoy so much more including its coffeehouses. In Clayton, there are 117 hotels and other accommodations to choose from. Find out more about Clayton.

What should I do while I'm visiting Clayton?

Cultural venues include Thousand Islands Museum, Antique Boat Museum, and The Clayton Opera House. Natural beauty is on display at Lake Ontario, Grenell Island, and Blind Bay. A couple of additional sights to add to your agenda are 1000 Islands River Rat Cheese and Clayton Marina. Check out what more to see and do in Expedia's Clayton guide.

What's the weather like in Clayton?

The hottest months are usually July and August with an average temp of 66°F, while the coldest months are January and February with an average of 26°F. The snowiest months in Clayton are January, February, March, and November, with each month seeing an average of 18 inches of snowfall.

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Book Hotels in Clayton on Expedia.com

Find hotels in Clayton, NY from ₩89,653

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Clayton

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Clayton hotels

1. 1000 Islands Harbor Hotel

2. Chateau Country Inn

3. West Winds Motel & Cottages

4. Capt.'s Inn & Suites

5. Comfort Inn & Suites Watertown - 1000 Islands

6. Fairfield Inn & Suites Watertown Thousand Islands

7. Allen's Budget Motel

8. Travel Inn

9. Hampton Inn Watertown

10. Otter Creek Inn

11. Capt. Thomson's Resort

12. Bonnie Castle Resort & Marina

13. Days Inn by Wyndham Watertown Fort Drum

14. Rock Ledge Motel

15. Adirondack Efficiencies Watertown

16. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

17. Hilton Garden Inn Watertown/Thousand Islands

18. Royal Inn Motel

19. Candlewood Suites Watertown Fort Drum by IHG

20. Quality Inn & Suites Watertown Fort Drum

Stay near popular Clayton attractions

Grass Point State Park

1000 Islands River Rat Cheese

Antique Boat Museum

Thousand Islands Museum

The Clayton Opera House

Cedar Point State Park

Coyote Moon Vineyards

C-Way Golf Course

Learn more about Clayton

Top Clayton Hotel Reviews

Hampton Inn Watertown

Spark by Hilton Watertown

Capt. Thomson's Resort

Chateau Country Inn

1000 Islands Harbor Hotel

Travel Inn

Otter Creek Inn

Capt.'s Inn & Suites

Quality Inn & Suites Watertown Fort Drum

More cheap stays in Clayton

Ramada by Wyndham Watertown/Thousand Islands NY

Capt.'s Inn & Suites

Quality Inn & Suites Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

Comfort Inn & Suites Watertown - 1000 Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Frequently asked questions

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