Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,427 reviews)
"Staff were very friendly and accommodating The resort was beautiful and location was amazing"
United States
Valerie
The price is ₩293,431
₩415,257 total
includes taxes & fees
May 10 - May 11
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,623 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is ₩249,196
₩364,460 total
includes taxes & fees
Apr 30 - May 1
Hyatt Regency Mission Bay Spa and Marina

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,561 reviews)
"Everything in the hotel is especial recommend 100% amazing place familiar, best place for relaxing "
United States
Rolando
The price is ₩278,759
₩398,451 total
includes taxes & fees
May 10 - May 11
Paradise Point Resort & Spa

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,308 reviews)
"My family and I had a great time, friendly staff "
United States
Brandon
The price is ₩263,941
₩337,284 total
includes taxes & fees
May 10 - May 11
The Dana on Mission Bay

Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very Good, (3,500 reviews)
"Great stay and family friendly "
United States
Gregory
The price is ₩249,196
₩361,020 total
includes taxes & fees
May 25 - May 26
Sheraton San Diego Resort

Studio 6 Suites San Ysidro, CA -San Diego South Bay

Studio 6 Suites San Ysidro, CA -San Diego South Bay
2.5 star property
30.1 km from Mission Bay
8.0 out of 10, Very Good, (1,619 reviews)
"Clean room, friendly and nice staff, easy parking and safe "
United States
Erik
The price is ₩108,608
₩123,747 total
includes taxes & fees
Apr 29 - Apr 30
Studio 6 Suites San Ysidro, CA -San Diego South Bay

Brisa Pacific Hotel Encinitas

Brisa Pacific Hotel Encinitas
2.0 star property
32 km from Mission Bay
8.8 out of 10, Excellent, (1,004 reviews)
"Great place in a good location "
United States
Christopher
The price is ₩150,827
₩165,910 total
includes taxes & fees
Apr 29 - Apr 30
Brisa Pacific Hotel Encinitas

Ramada by Wyndham San Diego Poway Miramar

Ramada by Wyndham San Diego Poway Miramar
2.0 star property
24.7 km from Mission Bay
7.0 out of 10, Good, (1,005 reviews)
"Quick to checking in nice staff and breakfast was good there was plenty of parking lot to park"
United States
Ruffa Regina
The price is ₩138,016
₩151,817 total
includes taxes & fees
Apr 29 - Apr 30
Ramada by Wyndham San Diego Poway Miramar

Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
9.0 out of 10, Wonderful, (1,263 reviews)
"Clean room, nice staff, a simple breakfast, and free parking on site."
United States
Nicole
The price is ₩180,365
₩205,165 total
includes taxes & fees
May 10 - May 11
Best Western Americana Inn

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
6.8 km from Mission Bay
9.2 out of 10, Wonderful, (3,561 reviews)
"Great place and walking distance to many different places. Stayed before getting on a cruise."
United States
Lawrence
The price is ₩198,188
₩227,808 total
includes taxes & fees
May 5 - May 6
Bay Club Hotel & Marina

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (2,030 reviews)
"Great calming place to stay"
United States
Megan
The price is ₩249,416
₩368,676 total
includes taxes & fees
May 19 - May 20
Bahia Resort Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,057 reviews)
"Great hotel and in a great location "
United States
Danielle
The price is ₩154,074
₩177,100 total
includes taxes & fees
May 3 - May 4
GreenTree Inn San Diego Mission Bay

Pleasant Inn

Pleasant Inn
2.5 star property
8 km from Mission Bay
8.6 out of 10, Excellent, (1,377 reviews)
" Clean room friendly staff"
Canada
Laurent
The price is ₩137,868
₩158,203 total
includes taxes & fees
May 6 - May 7
Pleasant Inn

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,209 reviews)
"Room was clean hotel was close to beach & restaurant "
United States
Andrea
The price is ₩166,696
₩191,608 total
includes taxes & fees
May 14 - May 15
Wyndham Garden San Diego Near SeaWorld

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.0 out of 10, Wonderful, (1,066 reviews)
"It was clean and convenient to the airport."
United States
Joey L
The price is ₩207,909
₩238,981 total
includes taxes & fees
May 5 - May 6
Holiday Inn Express San Diego Airport - Old Town by IHG

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very Good, (6,139 reviews)
"The hotel is a great location."
United States
Regina
The price is ₩263,941
₩357,338 total
includes taxes & fees
Apr 29 - Apr 30
Wyndham San Diego Bayside

Old Town Western Inn & Suites

Old Town Western Inn & Suites
2.5 star property
Old Town San Diego, 4 km from Mission Bay
7.8 out of 10, Good, (1,005 reviews)
"Staff was super friendly and located just short walk to downtown with good restaurants and coffee shop."
United States
Juan
The price is ₩142,828
₩161,045 total
includes taxes & fees
Apr 30 - May 1
Old Town Western Inn & Suites

Ocean Beach Hotel

Ocean Beach Hotel
3.0 star property
Ocean Beach, 4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,328 reviews)
"Excellent location"
United States
Hyo seon
The price is ₩265,653
₩299,518 total
includes taxes & fees
May 5 - May 6
Ocean Beach Hotel

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.4 out of 10, Very Good, (1,848 reviews)
"Very good breakfast offered; room was clean and comfortable; free parking; great area, close to downtown, Mission Beach and Liberty market. "
United States
Jeffrey
The price is ₩160,724
₩184,434 total
includes taxes & fees
May 5 - May 6
Best Western Yacht Harbor Hotel

Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,865 reviews)
"Nice staff, so clean, very pleasant stay."
United States
Rachel
The price is ₩231,492
₩265,638 total
includes taxes & fees
May 20 - May 21
Old Town Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Dog Beach and Ocean Beach Farmers Market, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Mission Beach, Bahia Point Beach, and Bay City Brewing Co. are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Sail Bay and Mission Bay Golf Course are also worth a stop.