A harbor with multiple sailboats and a bridge in the background.

Find hotels in Harbor Island, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,220 reviews)
"Nice view of the harbor"
United States
Alan
The price is ₩222,788
₩256,084 total
includes taxes & fees
Dec 6 - Dec 7
Hilton San Diego Airport/Harbor Island

2. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,809 reviews)
"Comfortable stay with beautiful views"
United States
Solair
The price is ₩158,374
₩251,100 total
includes taxes & fees
Nov 22 - Nov 23
Sheraton San Diego Resort

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,741 reviews)
"Very clean property and helpful, friendly staff."
United States
Dean
The price is ₩212,098
₩243,796 total
includes taxes & fees
Nov 22 - Nov 23
Hampton Inn & Suites San Diego Airport Liberty Station

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,708 reviews)
"Very pleasant stay."
United States
Alicia
The price is ₩238,462
₩274,100 total
includes taxes & fees
Nov 15 - Nov 16
Homewood Suites by Hilton San Diego Airport/Liberty Station

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,161 reviews)
"Best place to stay in San Diego and I will be coming back"
United States
Ronald
The price is ₩210,255
₩268,983 total
includes taxes & fees
Nov 22 - Nov 23
Humphreys Half Moon Inn

6. Manchester Grand Hyatt San Diego

Manchester Grand Hyatt San Diego
4.0 star property
Marina District, 3.9 km from Harbor Island
9.0 out of 10, Wonderful, (2,892 reviews)
"Love this hotel super nice"
United States
Sarah
The price is ₩244,524
₩357,909 total
includes taxes & fees
Nov 24 - Nov 25
Manchester Grand Hyatt San Diego

7. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.4 km from Harbor Island
9.2 out of 10, Wonderful, (1,482 reviews)
"The breakfast was amazing!"
United States
David
The price is ₩207,729
₩238,775 total
includes taxes & fees
Nov 15 - Nov 16
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

8. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (4,061 reviews)
"Beautiful, clean hotel and friendly staff!!"
United States
Robin
The price is ₩207,661
₩238,696 total
includes taxes & fees
Nov 9 - Nov 10
Bay Club Hotel & Marina

9. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,101 reviews)
"Great family hotel. Simple and clean yummy breakfast inexpensive and perfect for our short stay in sd"
United States
Alejandra
The price is ₩185,679
₩213,429 total
includes taxes & fees
Nov 15 - Nov 16
Holiday Inn Express San Diego Airport - Old Town by IHG

10. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
2.3 km from Harbor Island
9.0 out of 10, Wonderful, (1,640 reviews)
"Excellent location, great amenities and easy parking close to room."
Australia
Adam
The price is ₩172,914
₩198,756 total
includes taxes & fees
Nov 23 - Nov 24
Best Western Plus Island Palms Hotel & Marina

11. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,379 reviews)
"Nice easy to get to port for cruise, good food"
United States
Robin
The price is ₩191,482
₩269,526 total
includes taxes & fees
Nov 22 - Nov 23
Wyndham San Diego Bayside

12. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very good, (1,477 reviews)
"Had a good stay"
United States
Yesenia
The price is ₩155,643
₩179,413 total
includes taxes & fees
Nov 23 - Nov 24
Crowne Plaza San Diego - Mission Valley by IHG

13. The DEXTRO Little Italy, BW Premier Collection

The DEXTRO Little Italy, BW Premier Collection
3.0 star property
4 km from Harbor Island
8.8 out of 10, Excellent, (2,363 reviews)
"Really enjoyed my stay!"
United States
Kelly
The price is ₩172,914
₩200,485 total
includes taxes & fees
Nov 15 - Nov 16
The DEXTRO Little Italy, BW Premier Collection

14. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.3 km from Harbor Island
8.8 out of 10, Excellent, (1,752 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is ₩188,000
₩216,097 total
includes taxes & fees
Dec 1 - Dec 2
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

15. Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 6.5 km from Harbor Island
8.8 out of 10, Excellent, (2,521 reviews)
"Location is PERFECT & beautiful relaxing views from everywhere"
United States
VALENTINA
The price is ₩195,373
₩300,387 total
includes taxes & fees
Dec 6 - Dec 7
Bahia Resort Hotel

16. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 6 km from Harbor Island
8.6 out of 10, Excellent, (1,669 reviews)
"Amazing rooms and service!!"
United States
Aaroosh
The price is ₩258,040
₩368,802 total
includes taxes & fees
Nov 29 - Nov 30
San Diego Mission Bay Resort

17. The Sofia Hotel

The Sofia Hotel
3.5 star property
4.1 km from Harbor Island
8.8 out of 10, Excellent, (2,771 reviews)
"Great location and within walking distance of shops, restaurants and local attractions"
United Kingdom
Elliott
The price is ₩146,098
₩202,816 total
includes taxes & fees
Dec 7 - Dec 8
The Sofia Hotel

18. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,180 reviews)
"great stay"
United States
Sarah
The price is ₩130,959
₩150,531 total
includes taxes & fees
Nov 15 - Nov 16
Wyndham Garden San Diego Near SeaWorld

19. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,009 reviews)
"Would stay again, my kids enjoyed the room . Hotel it close to lots of restaurants and sea worlds , minutes away from mission beach ."
United States
Jose
The price is ₩173,392
₩199,305 total
includes taxes & fees
Nov 15 - Nov 16
Holiday Inn Express San Diego - SeaWorld Area by IHG

20. Best Western Plus Bayside Inn

Best Western Plus Bayside Inn
3.0 star property
3.7 km from Harbor Island
9.0 out of 10, Wonderful, (1,034 reviews)
"Nice spot to stay downtown"
United States
Ricardo
The price is ₩195,930
₩226,789 total
includes taxes & fees
Nov 22 - Nov 23
Best Western Plus Bayside Inn
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare top hotels in Harbor Island

3.5 star property
Harbor Island
4.0 star property
Harbor Island
2.5 star property
0.7 km from Harbor Island
3.0 star property
1 km from Harbor Island
3.5 star property
1.8 km from Harbor Island
8.8
Excellent
1,220 reviews
8.6
Excellent
3,809 reviews
9.2
Wonderful
1,741 reviews
9.4
Exceptional
1,708 reviews
9.2
Wonderful
3,161 reviews
The price is ₩222,788
₩256,084 total
includes taxes & fees
Dec 6 - Dec 7
The price is ₩158,374
₩251,100 total
includes taxes & fees
Nov 22 - Nov 23
The price is ₩212,098
₩243,796 total
includes taxes & fees
Nov 22 - Nov 23
The price is ₩238,462
₩274,100 total
includes taxes & fees
Nov 15 - Nov 16
The price is ₩210,255
₩268,983 total
includes taxes & fees
Nov 22 - Nov 23
  • No Breakfast included
  • Yes, Pool
  • No Spa
  • Yes, Pet friendly
  • Yes, WiFi included
  • Yes, Parking
  • No Breakfast included
  • Yes, Pool
  • No Spa
  • Yes, Pet friendly
  • Yes, WiFi included
  • Yes, Parking
  • Yes, Breakfast included
  • Yes, Pool
  • No Spa
  • Yes, Pet friendly
  • Yes, WiFi included
  • Yes, Parking
  • Yes, Breakfast included
  • Yes, Pool
  • No Spa
  • Yes, Pet friendly
  • Yes, WiFi included
  • Yes, Parking
  • No Breakfast included
  • Yes, Pool
  • Yes, Spa
  • No Pet friendly
  • No WiFi included
  • Yes, Parking

Where to stay in Harbor Island

Find the best Harbor Island areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best hotel for a stay in Harbor Island?
Based on our traveler data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.
How many hotels will I find in Harbor Island?
Book one of Expedia's 6 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.
Where can I learn more about changing or cancelling my trip to Harbor Island?
For more information about rescheduling or cancelling your trip to Harbor Island, head over to our customer service page.
What is there to do around this San Diego neighborhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Marine Corps Recruit Depot or Port of San Diego.