A long bridge over water with a sunset in the background.

Find hotels in Marathon Shores, Marathon from ₩72,530

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Dates

November 2026

December 2026

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Compare popular hotels in Marathon Shores

Property	Property class	Guest rating
Fairfield Inn & Suites by Marriott Marathon Florida Keys	3.0 star property	9.2 Wonderful 1,238 reviews	View
Bonefish Bay Motel	2.5 star property	9.2 Wonderful 670 reviews	View
Coconut Cay Resort & Marina	3.0 star property	8.6 Excellent 1,087 reviews	View
Hampton Inn Marathon - Florida Keys	2.5 star property	9.0 Wonderful 1,009 reviews	View
Seascape Resort & Marina	3.0 star property	9.4 Exceptional 648 reviews	View

Where to stay in Marathon Shores

Find the best Marathon Shores areas and neighborhoods for the activities you enjoy most.

An aerial view of a coastal area with a large bay, several islands, and a densely populated shoreline.

Little Venice

When in Little Venice, you can plan a visit to Captain Hooks Marina and Dive Center and Sunset Park Beach, some noteworthy sights in the nearby area.

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A sailboat with white sails on a turquoise sea, a beach with palm trees, and a partly cloudy sky.

Coral Lagoon

While Coral Lagoon might not have many sights to explore, venturing just a little farther will lead you to top things to see and do like Captain Hooks Marina and Dive Center and Sunset Park Beach.

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An aerial view of a coastal town with a beach, clear turquoise waters, and a small island.

Farara Shores

When in Farara Shores, you can plan a visit to Captain Hooks Marina and Dive Center and Sunset Park Beach, some noteworthy sights in the nearby area.

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Top Marathon Shores Hotel Reviews

A balcony with a view of the ocean, a round table, and two chairs.

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Marathon

10/10 Excellent

Maria

A pool area with lounge chairs, a thatched-roof structure, and a view of the ocean.

Hampton Inn Marathon - Florida Keys

Marathon

10/10 Excellent

Barbara

A covered outdoor seating area with tables and chairs, overlooking a body of water and a distant shoreline.

Bonefish Bay Motel

Marathon

10/10 Excellent

This property is the cleanest resort style property and hotel I’ve stayed at in years. My wife and I typically travel utilizing our timeshare or Marriott but only needed a night so we could escape S Florida hustle and bustle. Found this quaint little hotel fir a excellent deal and boy was it tremendous. Remodeled units with big fridge and stylish furnishings. Did I say clean and sanitized by super hard working staff. Great big property with boat docks and launch and amazing fun full size...

Fawna

A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.

Seascape Resort & Marina

Marathon

10/10 Excellent

THIS WAS AWESOME, GREAT STAFF, SUPER FRIENDLY PROFESSIONAL MANAGER ON SITE DAILY. A QUIET WELL MAINTAINED AND TRULY CARED ABOUT 11 UNIT MOTEL ON THE OCEAN. VERY CLEAN, LARGE ROOMS, GREAT BED!! COOKING FRESH FISH ON THE NICE PROVIDED GAS GRILLS WAS INCREDIBLE.. AWESOME VIEWS, LOTS OF TROPICAL FOLIAGE AND WILDLIFE SURROUNDS. I WILL GO BACK AS MUCH AS POSSIBLE.. FIREPITS LIT UP THE SCENE AS THE SUN SET. AWESOME..MISS IT !! FREE KAYAKS FOR GUESTS..

Anonymous traveler

A spacious living area with a gray sectional sofa, wooden beams, and a ceiling fan.

Aqua Lodge Rentals At Coconut Cay

Marathon

10/10 Excellent

I totally enjoyed my stay in the Aqua Lodge, it was very beautiful inside and out. I would highly recommend staying at this location. The sunsets in the RV section were absolutely breath taking!!! We rented a pontoon from this location and had a wonderful day one the water, the rates were fair and the pontoon was really nice!! I would stay there again. The staff (Jim and his wife) were extremely friendly and helpful, they made our stay very enjoyable!!

Sharon

A marina with a dock, a boat, and a row of buildings with large windows.

Coconut Cay Resort & Marina

Marathon

10/10 Excellent

Dawn

A modern kitchen with white cabinets, a microwave, and a dining area with a table and chairs.

Yacht Haven Marina

Marathon

10/10 Excellent

We stayed here for 5 days for a family vacation and absolutely adored the area and aqua lodges. It was so beautiful and peaceful, the manatees swam up nightly and the area had gorgeous views. The lodges are roomy and kitchen area was perfect- nice that they provided kitchen utensils, plates, glasses, coffee mugs you name it. Whatever we needed was provided here. Staff is very friendly and helpful- easily and readily able to assist any questions we had. The cleaning crew even had our aqua lodge...

Rachael

An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.

Isla Bella Beach Resort & Spa

Marathon

10/10 Excellent

Lindsay

A clear blue pool with white lounge chairs and palm trees, overlooking a calm sea.

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Marathon

10/10 Excellent

ISIS

A swimming pool surrounded by palm trees and lounge chairs.

Tranquility Bay Beachfront Hotel and Resort

Marathon

10/10 Excellent

Kristin

A wooden deck with a pool and chairs overlooking a beach with palm trees.

Grassy Flats Resort & Beach Club

Marathon

10/10 Excellent

We stayed at this hotel several times. It is very nice, It’s nice that they have a separate area for adults. They also have 3 in house places to eat, a tiki bar for lunch, a roof top for breakfast and bar in the evening and a restaurant for dinner (didn’t go to this one though). They include free paddle boards and kayaks. The rooms could have better A/C, they added another portable fan and seem to be having issues with A/C, hopefully will be resolved soon. Also they don’t have room service...

Victoria

A marina with boats docked, a swimming pool, and a building with a blue roof.

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Marathon

10/10 Excellent

Augustus

A room with a wooden table and chairs, a sliding glass door leading to a balcony, and a blue cooler on the floor.

Captain Pips Marina & Hideaway

Marathon

10/10 Excellent

janett

A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.

Skipjack Resort & Marina

Marathon

10/10 Excellent

Rosa

Lime Tree Bay Resort

Long Key

10/10 Excellent

Jack

An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.

Tropical Cottages

Marathon

10/10 Excellent

Rhonda

A neatly made bed with a grey and white duvet, a wooden headboard, and a bedside table with a lamp and remote control.

Knight's Key Suites

Marathon

10/10 Excellent

michele Renee

A resort with a swimming pool, lounge chairs, and a view of the ocean.

Bluegreen Vacations Hammocks at Marathon, Ascend Collection Resort

Marathon

10/10 Excellent

It was very frustrating that during our cumulative total of eight days stay, seven nights, the housekeeping plan was to only clean our room one time and it was on the seventh night. When we asked about this three days in, they said OK we can probably fit in one cleaning for you midway through your stay but that will be the only one, if you desire any additional cleanings that will be $150 each. When they cleaned the room, I would hardly call it clean. That was a little bit frustrating. Beyond...

Anonymous traveler

Frequently Asked Questions

What is Marathon Shores like?

Travelers to Marathon's Marathon Shores neighborhood will be sure to enjoy a stay in this neighborhood. Be sure to check out Captain Hooks Marina and Dive Center and Marathon Air Museum as part of your Marathon Shores travel plans.

How many hotels will I be able to find in Marathon Shores?

If you're searching for places to stay in Marathon, Expedia has something to meet your needs with 195 Marathon Shores hotels and other accommodations to choose from.

If I need to cancel my hotel reservation in Marathon Shores, will I receive a refund?

Yes! The majority of hotel reservations are fully refundable if you cancel before the hotel’s cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and receive a refund within a 24-hour period of booking. Put your dates in and click on "Search", then use the filter option "fully refundable" to view the top deals on offer in Marathon Shores.

Where can I learn more about changing or cancelling my trip to Marathon Shores?

For more information about updating your trip to Marathon Shores or cancelling it, go to https://www.expedia.com/service/.

What can I see and do in this Marathon neighborhood?

A few attractions you might want to check out while you're in Marathon Shores are Captain Hooks Marina and Dive Center and Marathon Air Museum. Sunset Park Beach and Coco Plum Beach are also worth a visit when you're out sightseeing in Marathon.

Find hotels in Marathon Shores, Marathon from ₩72,530

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Our top choices for Marathon Shores hotels

1. Fairfield Inn & Suites by Marriott Marathon Florida Keys

2. Hampton Inn Marathon - Florida Keys

3. Bonefish Bay Motel

4. Glunz Ocean Beach Hotel & Resort

5. Coconut Cay Resort & Marina

6. Seascape Resort & Marina

7. Kingsail Resort

8. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

9. Isla Bella Beach Resort & Spa

10. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

11. Skipjack Resort & Marina

12. Aqua Lodge Rentals At Coconut Cay

13. Banana Bay Resort & Marina

14. Siesta Motel

15. Tropical Cottages

16. Yacht Haven Marina

17. Rainbow Bend Resort

18. Captain Pips Marina & Hideaway

19. Tranquility Bay Beachfront Hotel and Resort

20. Hawks Cay Resort

Compare popular hotels in Marathon Shores

Where to stay in Marathon Shores

Little Venice

Coral Lagoon

Farara Shores

Top Marathon Shores Hotel Reviews

Fairfield Inn & Suites by Marriott Marathon Florida Keys

10/10 Excellent

Frequently Asked Questions

What is Marathon Shores like?

How many hotels will I be able to find in Marathon Shores?

If I need to cancel my hotel reservation in Marathon Shores, will I receive a refund?

Where can I learn more about changing or cancelling my trip to Marathon Shores?

What can I see and do in this Marathon neighborhood?