Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,466 reviews)
"Great resort!"
United States
Jean-Michelle
The price is ₩450,302
₩599,992 total
includes taxes & fees
Jun 14 - Jun 15
San Diego Mission Bay Resort

2. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,636 reviews)
"Beautiful Vacation spot."
United States
Daniel
The price is ₩410,102
₩553,848 total
includes taxes & fees
Jun 14 - Jun 15
Paradise Point Resort & Spa

3. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,630 reviews)
"Amazing place!"
United States
Yesenia
The price is ₩350,582
₩485,423 total
includes taxes & fees
Jun 17 - Jun 18
Hyatt Regency Mission Bay Spa and Marina

4. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,385 reviews)
"NICE PLACE TO STAY"
United States
René
The price is ₩372,395
₩472,833 total
includes taxes & fees
Jun 15 - Jun 16
The Dana on Mission Bay

5. Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (3,871 reviews)
"Great stay"
United States
Cameron
The price is ₩235,590
₩259,608 total
includes taxes & fees
Jun 10 - Jun 11
Best Western Plus Marina Gateway Hotel

6. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,726 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is ₩267,034
₩306,943 total
includes taxes & fees
Jun 30 - Jul 1
Hampton Inn & Suites San Diego Airport Liberty Station

7. Lafayette Hotel & Club

Lafayette Hotel & Club
4.0 star property
8.1 km from Mission Bay
9.4 out of 10, Exceptional, (1,696 reviews)
"Lovely hotel, very aesthetic place"
United States
Roxana
The price is ₩387,977
₩445,971 total
includes taxes & fees
Jun 16 - Jun 17
Lafayette Hotel & Club

8. Best Western Americana Inn

Best Western Americana Inn
2.5 star property
28.6 km from Mission Bay
8.8 out of 10, Excellent, (1,296 reviews)
"Everything was very pleasant,the place was super clean, and the breakfast was delicious👍"
United States
Nancy
The price is ₩190,592
₩216,798 total
includes taxes & fees
Jun 14 - Jun 15
Best Western Americana Inn

9. Holiday Inn Express San Diego South - Chula Vista by IHG

Holiday Inn Express San Diego South - Chula Vista by IHG
2.5 star property
19.3 km from Mission Bay
9.4 out of 10, Exceptional, (1,219 reviews)
"Very nice place to stay"
United States
Lingzhi
The price is ₩237,071
₩260,778 total
includes taxes & fees
Jul 5 - Jul 6
Holiday Inn Express San Diego South - Chula Vista by IHG

10. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.4 out of 10, Very Good, (3,554 reviews)
"My family and I truly enjoyed our stay."
United States
Beverly A
The price is ₩248,056
₩363,935 total
includes taxes & fees
Jul 5 - Jul 6
Sheraton San Diego Resort

11. Ayres Hotel San Diego South - Chula Vista

Ayres Hotel San Diego South - Chula Vista
3.0 star property
29.6 km from Mission Bay
9.8 out of 10, Exceptional, (1,103 reviews)
"Nice place good food for breakfast 👍"
United States
Paul
The price is ₩332,351
₩366,241 total
includes taxes & fees
Jul 6 - Jul 7
Ayres Hotel San Diego South - Chula Vista

12. SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway

SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway
3.0 star property
20.8 km from Mission Bay
8.8 out of 10, Excellent, (1,207 reviews)
"Great service and clean rooms. Happy with location and stay."
United States
Maria
The price is ₩278,907
₩320,590 total
includes taxes & fees
Jun 14 - Jun 15
SpringHill Suites by Marriott San Diego Rancho Bernardo/Scripps Poway

13. Marriott Marquis San Diego Marina

Marriott Marquis San Diego Marina
4.0 star property
9.3 km from Mission Bay
9.2 out of 10, Wonderful, (2,169 reviews)
"Excellent stay!"
United States
Joyce
The price is ₩528,209
₩685,893 total
includes taxes & fees
Jul 5 - Jul 6
Marriott Marquis San Diego Marina

14. Comfort Inn Chula Vista San Diego South

Comfort Inn Chula Vista San Diego South
2.5 star property
20.6 km from Mission Bay
8.2 out of 10, Very Good, (1,536 reviews)
"Everything was excellent. Room, breakfast location and staff. This was our second time staying here and we'll be back."
United States
Chris
The price is ₩197,338
₩217,466 total
includes taxes & fees
Jul 5 - Jul 6
Comfort Inn Chula Vista San Diego South

15. Ramada by Wyndham San Diego Poway Miramar

Ramada by Wyndham San Diego Poway Miramar
2.0 star property
24.7 km from Mission Bay
7.2 out of 10, Good, (1,019 reviews)
"Nice place to stay."
United States
Jacquie
The price is ₩198,367
₩218,202 total
includes taxes & fees
Jun 14 - Jun 15
Ramada by Wyndham San Diego Poway Miramar

16. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.2 out of 10, Wonderful, (1,889 reviews)
"Breakfast was good, rooms were decent."
United States
Andrea
The price is ₩242,182
₩277,910 total
includes taxes & fees
Jun 29 - Jun 30
Old Town Inn

17. Hampton Inn Cardiff Beach Encinitas, CA Near Del Mar

Hampton Inn Cardiff Beach Encinitas, CA Near Del Mar
3.0 star property
28.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,033 reviews)
"Great location and comfortable beds!"
United States
Michael
The price is ₩278,907
₩306,798 total
includes taxes & fees
Jun 8 - Jun 9
Hampton Inn Cardiff Beach Encinitas, CA Near Del Mar

18. Best Western San Diego/Miramar Hotel

Best Western San Diego/Miramar Hotel
2.5 star property
16.1 km from Mission Bay
8.0 out of 10, Very Good, (1,372 reviews)
"Great stay Really close to the cut water brewery!"
United States
Jessica
The price is ₩198,195
₩227,815 total
includes taxes & fees
Jun 14 - Jun 15
Best Western San Diego/Miramar Hotel

19. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,072 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is ₩249,302
₩286,561 total
includes taxes & fees
Jun 8 - Jun 9
Holiday Inn Express San Diego Airport - Old Town by IHG

20. Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very Good, (2,049 reviews)
"Great place"
United States
Mark
The price is ₩223,126
₩256,472 total
includes taxes & fees
Jun 8 - Jun 9
Best Western Plus Hacienda Hotel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, San Diego Mission Bay Resort is one of the top choices for your stay in Mission Bay. This resort offers a full-service spa and 2 restaurants. Other good options for your stay in the neighborhood include Paradise Point Resort & Spa and The Dana on Mission Bay.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Mission Beach and Hotel Circle are some favorite places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.