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Our top choices for Ayios Thomas hotels

Flat-screen TV
Porta Medina Boutique Hotel - Adults Only

Porta Medina Boutique Hotel - Adults Only

Porta Medina Boutique Hotel - Adults Only
Heraklion
9.4 out of 10, Exceptional, (82)
"Small boutique hotel in walking distance to restaurants and attractions, beautiful old building remodeled very nicely keeping the original feeling."
United States
Janice
Porta Medina Boutique Hotel - Adults Only
Daily buffet breakfast (EUR 10 per person)
Sofia Hotel

Sofia Hotel

Sofia Hotel
3.0 star property
Nea Alikarnassos
8.4 out of 10, Very Good, (943)
Enjoy this hotel's seasonal outdoor pool just minutes from Heraklion's attractions. After a swim, savor meals at the restaurant or refreshments at the poolside bar. With free WiFi, parking, and proximity to Knossos Palace, guests appreciate the attentive staff and convenient airport location.
"Friendly staff "
United Kingdom
Francisco
The price is ₩86,603
₩101,120 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Sofia Hotel
Outdoor pool
Aquila Atlantis Hotel

Aquila Atlantis Hotel

Aquila Atlantis Hotel
5.0 star property
Heraklion
9.0 out of 10, Wonderful, (1002)
Unwind at this sophisticated retreat with an outdoor pool and spa services. Just a short walk to major attractions and Heraklion Port, this luxurious hotel offers a restaurant, bar, and 24-hour fitness center, all praised for exceptional staff and breakfast.
"Room was clean, breakfast was excellent!!!"
United States
Carla Joan
The price is ₩147,921
₩175,136 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Aquila Atlantis Hotel
Breakfast, lunch and dinner served
Lato Boutique Hotel

Lato Boutique Hotel

Lato Boutique Hotel
4.0 star property
Heraklion
8.8 out of 10, Excellent, (1001)
Overlooking the waterfront in Heraklion, this luxurious retreat offers breathtaking sea views from many rooms with private balconies. Just minutes from the airport and major attractions, enjoy the top bar and restaurant while the attentive staff ensures a memorable stay.
"Our 5th time staying here…always great!!! Location, service and facilities are great"
United States
Richard
Lato Boutique Hotel
Seasonal outdoor pool, open 8:00 AM to 7:00 PM, pool umbrellas
GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel
5.0 star property
Heraklion
9.8 out of 10, Exceptional, (1000)
"Lovely room and views. Helpful staff. Clean throughout."
United States
Randy
The price is ₩177,392
₩201,957 total
includes taxes & fees
Jan 4 - Jan 5, 2026
GDM Megaron Historical Monument Hotel
Exterior
Delina Mountain Resort

Delina Mountain Resort

Delina Mountain Resort
4.0 star property
Anogia
8.6 out of 10, Excellent, (52)
Unwind at this serene mountain retreat featuring an indoor pool, poolside bar, and full-service spa with massages and aromatherapy. Near Nikos Xylouris Home and Museum of Grylios, with free WiFi and parking for easy exploration.
"Everything about this place is fantastic - The people, the food, the views, the rooms all incredible. "
United Kingdom
Rian
The price is ₩206,464
₩239,520 total
includes taxes & fees
Jan 27 - Jan 28, 2026
Delina Mountain Resort
Terrace/patio
Marvel Deluxe Rooms

Marvel Deluxe Rooms

Marvel Deluxe Rooms
Nea Alikarnassos
9.2 out of 10, Wonderful, (188)
Discover modern comfort at this centrally located hotel, just minutes from Heraklion Port. A scenic rooftop terrace offers relaxation after exploring nearby attractions, including the historic Palace of Knossos. Friendly staff ensure a memorable Mediterranean escape.
"Excellent stay"
United Kingdom
Trevor
The price is ₩79,028
₩90,812 total
includes taxes & fees
Jan 7 - Jan 8, 2026
Marvel Deluxe Rooms
Coffee shop
Chapter 02 Gallery Suites

Chapter 02 Gallery Suites

Chapter 02 Gallery Suites
Heraklion
9.2 out of 10, Wonderful, (74)
Discover a retreat just 5 minutes from Heraklion Port, featuring a full-service spa offering massages, facials, and body scrubs. Enjoy complimentary WiFi and parking while staying close to Manos Hatzidakis Theatre.
"Great place to spend a night!"
United States
Peter
The price is ₩142,490
₩163,062 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Chapter 02 Gallery Suites
Junior Suite - Dorippi | In-room safe, desk, iron/ironing board, free WiFi
Inotropes Boutique Suites - Adults Only

Inotropes Boutique Suites - Adults Only

Inotropes Boutique Suites - Adults Only
Archanes-Asterousia
9.6 out of 10, Exceptional, (28)
Immerse in relaxation at these elegant apartments, complete with robes and espresso makers. Wind down in the hot tub after exploring nearby Palace of Knossos and Titakis Winery. Free WiFi and parking enhance your stay in Archanes-Asterousia.
"An amazing clean apartment with all the necessary features, and easy parking. A lovely place to stay in summer or winter. Highly recommended. "
United Kingdom
Yiannis
The price is ₩113,368
₩129,587 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Inotropes Boutique Suites - Adults Only
Boating
Olive Green Hotel

Olive Green Hotel

Olive Green Hotel
4.0 star property
Heraklion
9.4 out of 10, Exceptional, (499)
Immerse yourself in Mediterranean charm at this business-friendly hotel featuring 2 restaurants including 626 all day cafe serving local cuisine. Just a 15-minute walk to Heraklion Port and close to the Archaeological Museum with airport access only 12 minutes away.
"Nice room, great breakfast, attentive staff, very good location"
United States
Lea
Olive Green Hotel
Junior Suite, 1 Bedroom, Balcony (B2) | Premium bedding, free minibar, in-room safe, soundproofing
Candia Suites & Rooms

Candia Suites & Rooms

Candia Suites & Rooms
Heraklion
8.0 out of 10, Very Good, (47)
Tucked in Heraklion, this welcoming hotel puts you just a 15-minute walk from the port and near 18 Anglon Square. Unwind in the peaceful garden or relax on the terrace after exploring local attractions.
"Great central location. Lovely welcome. Spacious. Ideal for a 2 night stay. "
United Kingdom
Debra
The price is ₩65,358
₩76,945 total
includes taxes & fees
Jan 23 - Jan 24, 2026
Candia Suites & Rooms
Deluxe Room, 1 Double or 2 Twin Beds | Premium bedding, minibar, in-room safe, desk
Ibis Styles Heraklion Central

Ibis Styles Heraklion Central

Ibis Styles Heraklion Central
4.0 star property
Heraklion
9.4 out of 10, Exceptional, (549)
Situated just 4 mi from the airport with shuttle service available, this hotel puts you near Heraklion Port and Archaeological Museum. Enjoy the restaurant, fitness center, and bar after exploring the historic Palace of Knossos.
"Our room was amazing. Loved the unique use of space! Breakfast was huge and had a great selection. Staff was very helpful. Loved the discounted parking under the hotel. Quick walk to wonderful shops, great little restaurants, and the coast. "
United States
Meghan
The price is ₩118,261
₩139,686 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Ibis Styles Heraklion Central
Terrace/patio
LAVRIS City Suites

LAVRIS City Suites

LAVRIS City Suites
Heraklion
9.6 out of 10, Exceptional, (168)
Enjoy rainfall showers and premium bedding in these well-equipped apartments. Heraklion Port and Palace of Knossos are located nearby, and the helpful staff receives high praise from guests. Free WiFi and parking add convenience.
"It is a very modern hotel with friendly and knowledgeable staff. "
United States
Abolfazl
LAVRIS City Suites
Executive Suite, Sea View | View from room
Atrion Hotel

Atrion Hotel

Atrion Hotel
3.0 star property
Heraklion
9.0 out of 10, Wonderful, (852)
"Great place"
United States
Ibraheem
The price is ₩106,431
₩123,681 total
includes taxes & fees
Jan 1 - Jan 2, 2026
Atrion Hotel
Coffee service
Marin Hotel

Marin Hotel

Marin Hotel
3.0 star property
Heraklion
8.2 out of 10, Very Good, (934)
Located in Heraklion, this family-friendly hotel puts you just a 10-minute walk from Heraklion Port and Museum of Ancient Greek Technology. Enjoy convenient room service or grab a bite at the café, then unwind with drinks at the bar.
"hotel was good and workers"
Canada
Ather
Marin Hotel
Seasonal outdoor pool, open 8:00 AM to 8:00 PM, sun loungers
Petronikolis Traditional House

Petronikolis Traditional House

Petronikolis Traditional House
Archanes-Asterousia
8.8 out of 10, Excellent, (34)
"The old couple who run the place are awesome. Highly recommend staying here for couple of nights to enjoy village experience in Crete"
United Kingdom
Vivek
Petronikolis Traditional House
Minibar, in-room safe, iron/ironing board, free WiFi
Manili Boutique Suites & Villas

Manili Boutique Suites & Villas

Manili Boutique Suites & Villas
5.0 star property
Archanes-Asterousia
9.6 out of 10, Exceptional, (27)
Relax in this Archanes-Asterousia retreat with 2 outdoor pools and complimentary breakfast. Just a 15-minute drive from Palace of Knossos and near Titakis Winery, this hotel offers free WiFi and parking. Unwind at the bar or café after exploring local attractions.
"Exceptional accommodations in a truly destination village. Great staff, pools everywhere and architecturally a treat! "
United States
David
The price is ₩191,647
₩221,026 total
includes taxes & fees
Jan 14 - Jan 15, 2026
Manili Boutique Suites & Villas
Deluxe Suite | Egyptian cotton sheets, premium bedding, down comforters, pillowtop beds
Artree Suites

Artree Suites

Artree Suites
Heraklion
9.6 out of 10, Exceptional, (233)
"Good place for staying to catch the ferry the next day "
Canada
Shafeena
Artree Suites
Deluxe Room with Balcony and City View | View from room
Metropole Urban Hotel

Metropole Urban Hotel

Metropole Urban Hotel
4.0 star property
Heraklion
9.2 out of 10, Wonderful, (281)
Experience Mediterranean charm at this urban hotel just 5 minutes from Heraklion Port. Guests praise the helpful staff and prime location near the Archaeological Museum and Palace of Knossos. Enjoy drinks at the bar or visit the cafe while staying connected with free WiFi.
"Nice hotel"
Canada
Penny
The price is ₩107,164
₩127,077 total
includes taxes & fees
Jan 1 - Jan 2, 2026
Metropole Urban Hotel
Beach nearby, sun loungers, beach umbrellas
Triton Authentic Cretan Hotel

Triton Authentic Cretan Hotel

Triton Authentic Cretan Hotel
4.0 star property
Minoa Pediada
8.6 out of 10, Excellent, (9)
Embrace coastal vibes at this authentic Cretan retreat featuring a seasonal outdoor pool and poolside bar. The Mediterranean-style hotel offers international cuisine at its restaurant, complemented by a tranquil garden and scenic terrace for relaxation.
"Wir kommen gerne wieder "
Germany
Manuela
The price is ₩138,043
₩161,817 total
includes taxes & fees
Jan 7 - Jan 8, 2026
Triton Authentic Cretan Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Ayios Thomas Hotel Reviews

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

10/10 Excellent
"Extraordinary"
Janos 1-night trip
Posted 8 days ago
GDM Megaron Historical Monument Hotel

More cheap stays in Ayios Thomas

El Greco Hotel

El Greco Hotel

4, Street 1821 Heraklion Crete Island
The price is ₩80,329 per night from Jan 4 to Jan 5
₩80,329
₩92,294 total
Jan 4 - Jan 5, 2026
includes taxes & fees
7.2/10 Good! (776 reviews)

Frequently asked questions

Where is the best place to stay in Ayios Thomas?
Located 14.5 mi (23.4 km) from the heart of Ayios Thomas, Aquila Atlantis Hotel is a top choice for your stay based on our traveler data. Other good choices for your trip to the area are Agapi Beach Resort - Premium All Inclusive and GDM Megaron Historical Monument Hotel. See all available top hotels, or vacation rentals in Ayios Thomas.
If I need to cancel my hotel reservation in Ayios Thomas, will I receive a refund?
Yes, most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and get a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Ayios Thomas.
Where can I learn more about changing or cancelling my trip to Ayios Thomas?
To find more details about changing or cancelling your trip to Ayios Thomas, head over to our customer service page.
What is the best hotel near Nikos Kazantzakis Airport (HER)?
Sofia Hotel is a popular 3-star hotel featuring free extended parking and a restaurant. It's located a short 0.8 mi (1.2 km) from Nikos Kazantzakis Airport. Other options close to the airport are Pasiphae Hotel and Life Boutique Hotel.
What's it like to stay in Ayios Thomas?
Visitors are sure to enjoy all that Ayios Thomas has to offer. A top sight in the area is Heraklion Port. There are 2669 hotels and other accommodations in the surrounding area. Find out more about Ayios Thomas.
What are the top places to visit in Ayios Thomas?
Heraklion Port is a notable place to visit in the area. You'll also find Shrine at Anemospilia and Knossos Archaeological Site in the area. Check out what more to see and do in Expedia's Ayios Thomas guide.
What's the weather like in Ayios Thomas?
The hottest months are usually July and August with an average temp of 77°F, while the coldest months are January and February with an average of 55°F. Average annual precipitation for Ayios Thomas is 14 inches.