An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Star rating

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,430 reviews)
"Awesome location by the Bay Firefly restaurant was excellent staff and food"
Canada
Satish
The price is ₩230,932
₩304,681 total
includes taxes & fees
Sep 28 - Sep 29
The Dana on Mission Bay

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,619 reviews)
"Everything was excellent!"
United States
Evangeline
The price is ₩340,127
₩463,200 total
includes taxes & fees
Oct 19 - Oct 20
San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,890 reviews)
"Great Stay!"
United States
Adarsh
The price is ₩271,958
₩384,850 total
includes taxes & fees
Oct 25 - Oct 26
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,650 reviews)
"Perfect breakfast!"
United States
Farzam
The price is ₩271,828
₩384,725 total
includes taxes & fees
Sep 30 - Oct 1
Hyatt Regency Mission Bay Spa and Marina

5. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,184 reviews)
"Great place to stay!"
United States
Nayla
The price is ₩130,955
₩150,526 total
includes taxes & fees
Oct 5 - Oct 6
Wyndham Garden San Diego Near SeaWorld

6. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (4,152 reviews)
"The room was clean when we got there and staff were very helpful and friendly!"
United States
Karla Daniela
The price is ₩149,154
₩171,449 total
includes taxes & fees
Sep 29 - Sep 30
Comfort Inn Sea World Area

7. Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (4,155 reviews)
"Great place to stay. Room was nice and clean, beds were comfortable and the hotel was nice as a whole great central location."
United States
Alyssa
The price is ₩207,668
₩228,839 total
includes taxes & fees
Oct 25 - Oct 26
Best Western Plus Marina Gateway Hotel

8. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (2,002 reviews)
"Great place to stay!!!"
United States
Layne
The price is ₩187,654
₩215,341 total
includes taxes & fees
Sep 29 - Sep 30
Old Town Inn

9. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,343 reviews)
"Very nice & very clean place to stay"
United States
Xuan
The price is ₩178,095
₩204,712 total
includes taxes & fees
Oct 1 - Oct 2
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

10. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.0 out of 10, Good, (2,006 reviews)
"Good room with nice shower. Staff was good and helpful and assisted me with booking."
United States
Mark
The price is ₩80,592
₩92,636 total
includes taxes & fees
Oct 11 - Oct 12
Heritage Inn San Diego

11. Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,767 reviews)
"Love this hotel, will be back endlessly love it here!"
United States
Armando
The price is ₩94,209
₩108,105 total
includes taxes & fees
Oct 25 - Oct 26
Kings Inn San Diego

12. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,703 reviews)
"Clean rooms and friendly staff!"
United States
Ana Lopez
The price is ₩252,609
₩290,361 total
includes taxes & fees
Oct 25 - Oct 26
Hampton Inn & Suites San Diego Airport Liberty Station

13. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,381 reviews)
"For price location it's great"
United States
Joseph
The price is ₩142,655
₩163,975 total
includes taxes & fees
Sep 29 - Sep 30
GreenTree Inn San Diego Mission Bay

14. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

La Quinta Inn & Suites by Wyndham San Diego Mission Bay
3.0 star property
North Pacific Beach, 3.5 km from Mission Bay
8.0 out of 10, Very good, (1,628 reviews)
"We only stayed one night but it was nice and easy"
United States
Lauren
The price is ₩159,407
₩183,269 total
includes taxes & fees
Oct 4 - Oct 5
La Quinta Inn & Suites by Wyndham San Diego Mission Bay

15. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,006 reviews)
"We loved our stay ! The staff was helpful and always maintained excellent cleaning"
United States
Christina
The price is ₩206,261
₩237,087 total
includes taxes & fees
Oct 26 - Oct 27
Holiday Inn Express San Diego - SeaWorld Area by IHG

16. Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.8 out of 10, Excellent, (2,417 reviews)
"Very relaxing and peaceful at this hotel."
United States
melissa
The price is ₩217,462
₩325,772 total
includes taxes & fees
Oct 25 - Oct 26
Bahia Resort Hotel

17. Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very good, (2,154 reviews)
"Great stay all around"
United States
Jason
The price is ₩183,094
₩210,456 total
includes taxes & fees
Sep 29 - Sep 30
Best Western Plus Hacienda Hotel Old Town

18. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very good, (2,064 reviews)
"The room was very clean, the staff was very friendly, and around the property was nice as well."
United States
Christian
The price is ₩149,779
₩172,164 total
includes taxes & fees
Oct 25 - Oct 26
Comfort Inn San Diego Old Town

19. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,517 reviews)
"great location, excellent hotel"
United States
Edward Palacios
The price is ₩172,495
₩198,274 total
includes taxes & fees
Oct 25 - Oct 26
Hilton Garden Inn San Diego Old Town/SeaWorld Area

20. Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.5 km from Mission Bay
8.0 out of 10, Very good, (3,093 reviews)
"Great area to stay that is close to a lot of places."
United States
Joshua
The price is ₩114,886
₩132,055 total
includes taxes & fees
Oct 12 - Oct 13
Days Inn by Wyndham San Diego Hotel Circle
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Mission Beach and Marine Corps Recruit Depot are some favorite places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.