An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Star rating

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,437 reviews)
"Awesome location by the Bay Firefly restaurant was excellent staff and food"
Canada
Satish
The price is ₩229,041
₩302,188 total
includes taxes & fees
Sep 29 - Sep 30
The Dana on Mission Bay

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,630 reviews)
"Beautiful resort! Would definitely stay there again!!"
United States
brittany
The price is ₩296,541
₩412,463 total
includes taxes & fees
Oct 28 - Oct 29
San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,903 reviews)
"Great Stay!"
United States
Adarsh
The price is ₩253,462
₩362,999 total
includes taxes & fees
Oct 25 - Oct 26
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,653 reviews)
"Perfect breakfast!"
United States
Farzam
The price is ₩269,460
₩381,374 total
includes taxes & fees
Sep 30 - Oct 1
Hyatt Regency Mission Bay Spa and Marina

5. Comfort Inn San Diego - SeaWorld Area

Comfort Inn San Diego - SeaWorld Area
3.5 star property
2.8 km from Mission Bay
8.6 out of 10, Excellent, (4,161 reviews)
"It is very clean and furniture is up to date very comfortable bed location is perfect and definitely would stay again"
United States
alex
The price is ₩147,323
₩169,341 total
includes taxes & fees
Oct 27 - Oct 28
Comfort Inn San Diego - SeaWorld Area

6. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.0 out of 10, Good, (2,017 reviews)
"Good room with nice shower. Staff was good and helpful and assisted me with booking."
United States
Mark
The price is ₩79,890
₩91,829 total
includes taxes & fees
Oct 19 - Oct 20
Heritage Inn San Diego

7. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (2,012 reviews)
"I highly recommend staying here. Staff was friendly and our room was spacious."
United States
Leticia C
The price is ₩186,117
₩213,578 total
includes taxes & fees
Sep 29 - Sep 30
Old Town Inn

8. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,200 reviews)
"Great place to stay!"
United States
Nayla
The price is ₩129,882
₩149,293 total
includes taxes & fees
Oct 5 - Oct 6
Wyndham Garden San Diego Near SeaWorld

9. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,366 reviews)
"Very nice & very clean place to stay"
United States
Xuan
The price is ₩187,647
₩215,691 total
includes taxes & fees
Oct 4 - Oct 5
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

10. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,714 reviews)
"Clean rooms and friendly staff!"
United States
Ana Lopez
The price is ₩242,419
₩278,648 total
includes taxes & fees
Oct 25 - Oct 26
Hampton Inn & Suites San Diego Airport Liberty Station

11. Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,779 reviews)
"Love this hotel, will be back endlessly love it here!"
United States
Armando
The price is ₩109,782
₩125,975 total
includes taxes & fees
Oct 28 - Oct 29
Kings Inn San Diego

12. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,390 reviews)
"Great place to stay! Close to the trains and mta trolley system. Great breakfast!"
United States
Juan
The price is ₩152,455
₩175,240 total
includes taxes & fees
Oct 4 - Oct 5
GreenTree Inn San Diego Mission Bay

13. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,010 reviews)
"Was good stay"
United States
Jonathan
The price is ₩182,799
₩210,119 total
includes taxes & fees
Oct 1 - Oct 2
Holiday Inn Express San Diego - SeaWorld Area by IHG

14. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

La Quinta Inn & Suites by Wyndham San Diego Mission Bay
3.0 star property
North Pacific Beach, 3.5 km from Mission Bay
8.0 out of 10, Very good, (1,632 reviews)
"We only stayed one night but it was nice and easy"
United States
Lauren
The price is ₩158,100
₩181,729 total
includes taxes & fees
Oct 5 - Oct 6
La Quinta Inn & Suites by Wyndham San Diego Mission Bay

15. Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.5 km from Mission Bay
8.0 out of 10, Very good, (3,102 reviews)
"Great area to stay that is close to a lot of places."
United States
Joshua
The price is ₩113,945
₩130,974 total
includes taxes & fees
Oct 13 - Oct 14
Days Inn by Wyndham San Diego Hotel Circle

16. Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.8 out of 10, Excellent, (2,431 reviews)
"Bahia was a great place to have a staycation."
United States
Margarita
The price is ₩237,423
₩348,023 total
includes taxes & fees
Oct 25 - Oct 26
Bahia Resort Hotel

17. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,521 reviews)
"The hotel was quiet and comfortable for our needs. Very close to the airport and we will definitely stay there again."
United States
Djelma
The price is ₩162,326
₩186,585 total
includes taxes & fees
Oct 27 - Oct 28
Hilton Garden Inn San Diego Old Town/SeaWorld Area

18. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.6 out of 10, Excellent, (3,721 reviews)
"Great place to stay"
United States
andrew
The price is ₩188,216
₩284,834 total
includes taxes & fees
Oct 25 - Oct 26
Sheraton San Diego Resort

19. Handlery Hotel

Handlery Hotel
3.5 star property
5 km from Mission Bay
8.4 out of 10, Very good, (2,965 reviews)
"This was convenient close to everything, the rooms were decent and the staff friendly"
United States
Matthew
The price is ₩139,740
₩160,624 total
includes taxes & fees
Sep 29 - Sep 30
Handlery Hotel

20. Town and Country San Diego

Town and Country San Diego
4.0 star property
5.2 km from Mission Bay
8.6 out of 10, Excellent, (1,936 reviews)
"Enjoyed our stay"
United States
Sol
The price is ₩309,608
₩402,609 total
includes taxes & fees
Sep 29 - Sep 30
Town and Country San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Mission Beach and Marine Corps Recruit Depot are some favorite places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.