An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Find hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Star rating

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,469 reviews)
"Loved our stay here!"
United States
elizabeth
The price is ₩215,391
₩286,102 total
includes taxes & fees
Oct 1 - Oct 2
The Dana on Mission Bay

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,591 reviews)
"Wonderful place"
United States
Angela
The price is ₩347,254
₩470,053 total
includes taxes & fees
Oct 4 - Oct 5
San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,885 reviews)
"Resort was beautiful rooms nice its very clean would stay again!!!"
United States
Sandra
The price is ₩278,755
₩391,378 total
includes taxes & fees
Oct 4 - Oct 5
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,662 reviews)
"Beautiful pool area for the kids to enjoy."
United States
Jerri
The price is ₩266,809
₩377,622 total
includes taxes & fees
Sep 30 - Oct 1
Hyatt Regency Mission Bay Spa and Marina

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,309 reviews)
"Great place to stay. Great price always happy with our stay."
United States
Joshua
The price is ₩207,789
₩238,843 total
includes taxes & fees
Sep 22 - Sep 23
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

6. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (4,091 reviews)
"Great location and friendly."
United States
Rick
The price is ₩153,851
₩176,845 total
includes taxes & fees
Sep 30 - Oct 1
Comfort Inn Sea World Area

7. Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (4,092 reviews)
"Great place to stay, very clean and comfortable beds."
United States
Alexander
The price is ₩186,364
₩205,362 total
includes taxes & fees
Sep 10 - Sep 11
Best Western Plus Marina Gateway Hotel

8. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,977 reviews)
"Great place to stay!!!"
United States
Layne
The price is ₩200,080
₩229,590 total
includes taxes & fees
Sep 14 - Sep 15
Old Town Inn

9. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,359 reviews)
"Great location"
United States
Moises
The price is ₩150,955
₩173,515 total
includes taxes & fees
Sep 14 - Sep 15
GreenTree Inn San Diego Mission Bay

10. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,210 reviews)
"Great place to stay!"
United States
Nayla
The price is ₩128,565
₩147,785 total
includes taxes & fees
Sep 23 - Sep 24
Wyndham Garden San Diego Near SeaWorld

11. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,707 reviews)
"Loved the staff and location."
United States
David
The price is ₩236,119
₩271,407 total
includes taxes & fees
Oct 5 - Oct 6
Hampton Inn & Suites San Diego Airport Liberty Station

12. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,000 reviews)
"all good nice stay nice breakfast will revisit soon"
Canada
nishant
The price is ₩187,705
₩215,757 total
includes taxes & fees
Sep 13 - Sep 14
Holiday Inn Express San Diego - SeaWorld Area by IHG

13. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.0 out of 10, Good, (1,945 reviews)
"Good for a few days trip"
United States
Kyle
The price is ₩79,501
₩91,382 total
includes taxes & fees
Sep 21 - Sep 22
Heritage Inn San Diego

14. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.6 out of 10, Excellent, (3,673 reviews)
"Great place"
United States
Kathleen
The price is ₩226,587
₩328,265 total
includes taxes & fees
Sep 27 - Sep 28
Sheraton San Diego Resort

15. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 4.1 km from Mission Bay
8.8 out of 10, Excellent, (1,175 reviews)
"Overall, great place to stay."
United States
David
The price is ₩192,599
₩221,383 total
includes taxes & fees
Sep 27 - Sep 28
Fairfield Inn & Suites San Diego Old Town

16. Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,741 reviews)
"I love this hotel, but respectful, perfect location good food very good food"
United States
yasir
The price is ₩127,204
₩145,967 total
includes taxes & fees
Sep 13 - Sep 14
Kings Inn San Diego

17. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very Good, (3,002 reviews)
"Great place to stay"
United States
Philomena
The price is ₩177,046
₩203,497 total
includes taxes & fees
Oct 1 - Oct 2
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

18. Courtyard by Marriott Old Town

Courtyard by Marriott Old Town
3.0 star property
Old Town San Diego, 3.9 km from Mission Bay
8.8 out of 10, Excellent, (1,001 reviews)
"I loved the hotel and it is blocks away from the Old Town attractions."
United States
Paola
The price is ₩192,599
₩221,383 total
includes taxes & fees
Sep 28 - Sep 29
Courtyard by Marriott Old Town

19. Days Inn by Wyndham San Diego Hotel Circle

Days Inn by Wyndham San Diego Hotel Circle
3.0 star property
5.5 km from Mission Bay
8.0 out of 10, Very Good, (3,065 reviews)
"Rooms very clean and staff very friendly"
United States
Alyssa
The price is ₩124,220
₩142,785 total
includes taxes & fees
Sep 22 - Sep 23
Days Inn by Wyndham San Diego Hotel Circle

20. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very Good, (2,045 reviews)
"Friendly staff and great breakfast!"
Canada
Heather
The price is ₩162,968
₩187,325 total
includes taxes & fees
Sep 30 - Oct 1
Comfort Inn San Diego Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and The Dana On Mission Bay, BW Premier Collection are also worth a stop.