An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,421 reviews)
"Loved our stay here!"
United States
elizabeth
The price is ₩215,528
₩286,297 total
includes taxes & fees
Sep 29 - Sep 30
The Dana on Mission Bay

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,601 reviews)
"Wonderful place"
United States
Angela
The price is ₩374,306
₩501,181 total
includes taxes & fees
Sep 30 - Oct 1
San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,863 reviews)
"Resort was beautiful rooms nice its very clean would stay again!!!"
United States
Sandra
The price is ₩288,712
₩402,855 total
includes taxes & fees
Oct 4 - Oct 5
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very Good, (1,635 reviews)
"Beautiful pool area for the kids to enjoy."
United States
Jerri
The price is ₩266,978
₩377,861 total
includes taxes & fees
Sep 30 - Oct 1
Hyatt Regency Mission Bay Spa and Marina

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,318 reviews)
"Great place to stay. Great price always happy with our stay."
United States
Joshua
The price is ₩207,921
₩238,994 total
includes taxes & fees
Sep 20 - Sep 21
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

6. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,971 reviews)
"Great place to stay!!!"
United States
Layne
The price is ₩200,207
₩229,736 total
includes taxes & fees
Sep 15 - Sep 16
Old Town Inn

7. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (4,101 reviews)
"Great location and friendly."
United States
Rick
The price is ₩154,552
₩177,650 total
includes taxes & fees
Sep 21 - Sep 22
Comfort Inn Sea World Area

8. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,172 reviews)
"Great place to stay!"
United States
Nayla
The price is ₩128,686
₩147,919 total
includes taxes & fees
Sep 20 - Sep 21
Wyndham Garden San Diego Near SeaWorld

9. Best Western Plus Marina Gateway Hotel

Best Western Plus Marina Gateway Hotel
3.5 star property
16.7 km from Mission Bay
9.2 out of 10, Wonderful, (4,117 reviews)
"Great place to stay, very clean and comfortable beds."
United States
Alexander
The price is ₩216,145
₩238,181 total
includes taxes & fees
Sep 20 - Sep 21
Best Western Plus Marina Gateway Hotel

10. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.2 km from Mission Bay
7.0 out of 10, Good, (1,960 reviews)
"Good for a few days trip"
United States
Kyle
The price is ₩84,521
₩97,145 total
includes taxes & fees
Sep 29 - Sep 30
Heritage Inn San Diego

11. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,355 reviews)
"Great location"
United States
Moises
The price is ₩151,051
₩173,625 total
includes taxes & fees
Sep 20 - Sep 21
GreenTree Inn San Diego Mission Bay

12. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,714 reviews)
"Loved the staff and location."
United States
David
The price is ₩251,926
₩289,575 total
includes taxes & fees
Sep 28 - Sep 29
Hampton Inn & Suites San Diego Airport Liberty Station

13. Kings Inn San Diego

Kings Inn San Diego
2.5 star property
4.9 km from Mission Bay
8.8 out of 10, Excellent, (3,751 reviews)
"Love this hotel, will be back endlessly love it here!"
United States
Armando
The price is ₩108,770
₩124,814 total
includes taxes & fees
Oct 13 - Oct 14
Kings Inn San Diego

14. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,002 reviews)
"all good nice stay nice breakfast will revisit soon"
Canada
nishant
The price is ₩203,923
₩234,399 total
includes taxes & fees
Sep 21 - Sep 22
Holiday Inn Express San Diego - SeaWorld Area by IHG

15. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
6 km from Mission Bay
8.6 out of 10, Excellent, (3,691 reviews)
"Great place"
United States
Kathleen
The price is ₩226,730
₩328,473 total
includes taxes & fees
Sep 27 - Sep 28
Sheraton San Diego Resort

16. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very Good, (3,008 reviews)
"Great place to stay"
United States
Philomena
The price is ₩177,158
₩203,626 total
includes taxes & fees
Oct 1 - Oct 2
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

17. Best Western Seven Seas

Best Western Seven Seas
3.0 star property
5.6 km from Mission Bay
8.0 out of 10, Very Good, (3,905 reviews)
"Great staff, cold room, nice amenities."
United States
Jamie
The price is ₩113,499
₩130,460 total
includes taxes & fees
Sep 20 - Sep 21
Best Western Seven Seas

18. Comfort Inn San Diego Old Town

Comfort Inn San Diego Old Town
2.5 star property
Old Town San Diego, 4 km from Mission Bay
8.2 out of 10, Very Good, (2,050 reviews)
"Friendly staff and great breakfast!"
Canada
Heather
The price is ₩157,021
₩180,488 total
includes taxes & fees
Sep 22 - Sep 23
Comfort Inn San Diego Old Town

19. Town and Country San Diego

Town and Country San Diego
4.0 star property
5.2 km from Mission Bay
8.6 out of 10, Excellent, (1,885 reviews)
"Enjoyed our stay"
United States
Sol
The price is ₩283,949
₩372,685 total
includes taxes & fees
Sep 18 - Sep 19
Town and Country San Diego

20. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,506 reviews)
"great location, excellent hotel"
United States
Edward Palacios
The price is ₩176,622
₩203,018 total
includes taxes & fees
Sep 28 - Sep 29
Hilton Garden Inn San Diego Old Town/SeaWorld Area
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include San Diego Mission Bay Resort and The Dana on Mission Bay.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, North Cove Beach and Marina Village Conference Center are also worth a stop.