The Best Hotels Closest to Shelter Island in San Diego for 2026

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Our top choices for Shelter Island hotels

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

1. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

MANUEL

₩215,567

₩247,783 total

includes taxes & fees

Nov 8 - Nov 9

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A beach with sand dunes and a person walking.

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

₩245,080

₩281,708 total

includes taxes & fees

Oct 25 - Oct 26

A balcony with a table set for two, overlooking a marina with numerous boats.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

3. Bay Club Hotel & Marina

0.7 km from Shelter Island

Thuan

₩209,884

₩241,250 total

includes taxes & fees

Oct 26 - Oct 27

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A modern lobby with a reception desk, seating area, and a large screen.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

4. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Luis

₩238,097

₩273,682 total

includes taxes & fees

Nov 1 - Nov 2

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Sarah

₩186,832

₩214,754 total

includes taxes & fees

Nov 9 - Nov 10

A resort with two-story buildings, balconies, and a pool area.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

A canal lined with palm trees and a row of buildings with balconies.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

6. Humphreys Half Moon Inn

1 km from Shelter Island

Svenja

₩226,504

₩287,164 total

includes taxes & fees

Oct 25 - Oct 26

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

₩235,578

₩270,785 total

includes taxes & fees

Nov 8 - Nov 9

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A hotel room with two beds, a desk, a TV, and a mirror.

A marina with numerous boats, a Hilton hotel, and a view of the surrounding cityscape.

A hotel hallway with carpeted floors, recessed lighting, and a central light fixture.

8. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

₩218,757

₩251,450 total

includes taxes & fees

Nov 8 - Nov 9

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A bathroom with a wooden bench, a mirror, shelves with toiletries, and a robe hanging on the wall.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

9. The Pearl Hotel

1.6 km from Shelter Island

Ana Livia

₩210,180

₩237,401 total

includes taxes & fees

Oct 25 - Oct 26

A square pizza on a wooden board with a fire pit in the background.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

10. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

₩196,723

₩226,123 total

includes taxes & fees

Oct 25 - Oct 26

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

11. Sea Harbor Hotel

1.4 km from Shelter Island

Michael

₩132,915

₩149,861 total

includes taxes & fees

Nov 10 - Nov 11

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A gym with a treadmill, elliptical, and weight machines.

12. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Falizity

₩152,790

₩175,333 total

includes taxes & fees

Nov 8 - Nov 9

A rooftop terrace with outdoor seating, a view of the marina, and a modern building with large windows.

A modern restaurant with a long wooden bar, black bar stools, and a mix of seating options including a bench and individual chairs.

A modern hotel with a curved facade, multiple balconies, and large windows.

A hotel room with two beds, a view of the city, a dining area, and a large window.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Kaylee

₩207,713

₩238,756 total

includes taxes & fees

Nov 8 - Nov 9

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

A multi-level interior with a staircase, black railings, and hanging lights.

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

₩143,542

₩161,850 total

includes taxes & fees

Oct 13 - Oct 14

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

15. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Luis

₩140,526

₩158,717 total

includes taxes & fees

Nov 9 - Nov 10

A marina with boats, a yacht, and a balcony with two chairs and a table.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

16. Kona Kai San Diego

0.2 km from Shelter Island

Michael

₩268,889

₩410,486 total

includes taxes & fees

Nov 9 - Nov 10

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

17. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

₩152,682

₩175,203 total

includes taxes & fees

Nov 11 - Nov 12

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

18. Hotel Point Loma

1.5 km from Shelter Island

Clint

₩131,479

₩148,243 total

includes taxes & fees

Oct 13 - Oct 14

A modern reception area with a wooden bench and a green hedge.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

19. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

₩101,987

₩114,991 total

includes taxes & fees

Oct 13 - Oct 14

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

₩75,965

₩85,798 total

includes taxes & fees

Oct 27 - Oct 28

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Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,725 reviews	View
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,703 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 4,005 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,252 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,616 reviews	View

Top Shelter Island Hotel Reviews

Wyndham San Diego Bayside

8/10 Good

"Ok"

Sheraton San Diego Resort

10/10 Excellent

"Great Bay View Wonderful decorating room, specially the mirror infront of the bed!"

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"Fantastic stay! The property was clean and beautiful."

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"Best hotel that you stay at! It felt like home away from home. Will not be staying anywhere else in San Diego for future stays!"

Sea Harbor Hotel

10/10 Excellent

"Housekeeping kept room clean and well stocked."

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

8/10 Good

"Bathrooms needs a little bit of maintenance."

Comfort Inn San Diego Airport At The Harbor

10/10 Excellent

"Buena atenciones, Lugar Seguro, Limpio, y Accesible a medios de transporte publico"

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent

"Staff were all very pleasant. Valet was prompt with getting your vehicle. And breakfast was delicious. The rooms are very clean and nicely decorated as is the rest of the hotel. My favorite spot was the courtyard, especially near the fireplace. I would stay here again."

Hotel Point Loma

10/10 Excellent

"The guy in the lobby it’s amazing and really friendly"

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your travels in San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening at Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, check out the 38 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveler data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodations within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! The majority of hotel room reservations are fully refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and be given a refund within 24 hours of your booking. Put your dates in and click on "Search", then use the filter option "fully refundable" to view the top deals on offer near Shelter Island.

Where can I learn more about changing or cancelling my trip in the area near Shelter Island?

For more details about rescheduling or cancelling your stay near Shelter Island, click here.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego, or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse, and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park, and San Diego Civic Theatre.

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Find hotels near Shelter Island, San Diego from ₩85,798

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Our top choices for Shelter Island hotels

1. Hampton Inn & Suites San Diego Airport Liberty Station

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

3. Bay Club Hotel & Marina

4. Courtyard by Marriott San Diego Airport/Liberty Station

5. Best Western Plus Island Palms Hotel & Marina

6. Humphreys Half Moon Inn

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

8. Hilton San Diego Airport/Harbor Island

9. The Pearl Hotel

10. DoubleTree by Hilton San Diego Bayside

11. Sea Harbor Hotel

12. Best Western Yacht Harbor Hotel

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

15. Comfort Inn San Diego Airport At The Harbor

16. Kona Kai San Diego

17. Ramada by Wyndham San Diego Airport

18. Hotel Point Loma

19. Hotel Aqua Mar

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Wyndham San Diego Bayside

Sheraton San Diego Resort

Best Western Plus Island Palms Hotel & Marina

Homewood Suites by Hilton San Diego Airport/Liberty Station

Sea Harbor Hotel

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Comfort Inn San Diego Airport At The Harbor

The Monsaraz San Diego, Tapestry Collection by Hilton

Hotel Point Loma

Other attractions near Shelter Island

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

Explore a world of travel with Expedia