Plan, book, travel with confidence
Better together
Save up to ₩1,660,000 when you book a flight and hotel together*
Find the right fit
With over 300,000 hotels worldwide, it's easy to create a perfect package
Rest easy
Plan, book, and manage your trip all in one place

Top Pet-friendly San Juan Islands Hotels

Earthbox Inn & Spa

410 Spring Street Friday Harbor WA

13 min drive from Roche Harbor Marina

Enjoy hiking or biking trails near this city-center hotel, where dogs are treated to pet-friendly amenities, like food and water bowls. Fees apply for pets.

8.8/10 Excellent! (1,001 reviews)

"Excellent"

Reviewed on May 21, 2026

Tucker House Inn

275 C Street Friday Harbor WA

13 min drive from Roche Harbor Marina

Four-legged friends will appreciate the amenities, such as food and water bowls, during their stay (fees apply) at this pet-friendly bed & breakfast.

9.2/10 Wonderful! (290 reviews)

"Booked through hotel.com. Very disappointed with room. Make sure you know what room you are getting when you book!"

Reviewed on May 21, 2026

Deer Harbor Inn

33 Inn Lane Deer Harbor WA

28 min walk from Roche Harbor Marina

Stay at this hotel in Deer Harbor. Enjoy free WiFi, free parking, and a garden. Popular attractions Skull Island State Park and West Sound Marina are located ...

8.4/10 Very Good! (206 reviews)

"No personnel on site one on site. Property upkeep Old and outdated. Bed squeaked and on wheels, mattress terrible."

Reviewed on May 23, 2026

See all 576 properties in San Juan Islands

Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.