What's it like in Harbor Island?

Harbor Island is a scenic neighborhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best hotel for a stay in Harbor Island?

Based on our traveler data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.

How many hotels will I find in Harbor Island?

Book one of Expedia's 6 hotels and other accommodations in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel bookings are fully refundable if you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a reservation that's non-refundable, it may still be possible to cancel it and receive a refund within a 24-hour period of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to get the best deals in Harbor Island.

Where can I learn more about changing or cancelling my trip to Harbor Island?

For more information about rescheduling or cancelling your trip to Harbor Island, head over to our customer service page .

What is there to do around this San Diego neighborhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, be sure to visit other sights like Marine Corps Recruit Depot or USS Midway Museum.

Top Harbor Island Hotels

A harbor with multiple sailboats and a bridge in the background.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

Harbor Island

Ingrid

₩305,252 total

includes taxes & fees

Aug 3 - Aug 4

Studio Suite, 1 King Bed with Sofa bed, Balcony | View from room

2. Sheraton San Diego Resort

Harbor Island

Andre

₩412,807 total

includes taxes & fees

Aug 2 - Aug 3

3. Hampton Inn & Suites San Diego Airport Liberty Station

0.7 km from Harbor Island

Edward

₩280,654 total

includes taxes & fees

Aug 23 - Aug 24

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

1 km from Harbor Island

₩394,896 total

includes taxes & fees

Aug 4 - Aug 5

5. Comfort Inn San Diego Airport At The Harbor

2 km from Harbor Island

John

₩221,542 total

includes taxes & fees

Aug 11 - Aug 12

Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout drapes, iron/ironing board, cribs (surcharge)

6. Best Western Yacht Harbor Hotel

1.7 km from Harbor Island

Natalia

₩244,209 total

includes taxes & fees

Jul 27 - Jul 28

7. Humphreys Half Moon Inn

1.8 km from Harbor Island

alex

₩435,567 total

includes taxes & fees

Aug 4 - Aug 5

8. Sea Harbor Hotel

2.1 km from Harbor Island

Ryan

₩233,653 total

includes taxes & fees

Aug 3 - Aug 4

9. Holiday Inn Express San Diego Airport - Old Town by IHG

2.9 km from Harbor Island

Tirthankar

₩256,838 total

includes taxes & fees

Aug 4 - Aug 5

10. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.3 km from Harbor Island

Allan

₩237,692 total

includes taxes & fees

Jul 27 - Jul 28

11. Bay Club Hotel & Marina

2 km from Harbor Island

Sandra

₩326,130 total

includes taxes & fees

Aug 23 - Aug 24

3 restaurants; breakfast, lunch, and dinner served

12. Wyndham San Diego Bayside

3.3 km from Harbor Island

Richard

₩327,486 total

includes taxes & fees

Jul 28 - Jul 29

13. Wyndham Garden San Diego Near SeaWorld

3.3 km from Harbor Island

Raygan

₩236,128 total

includes taxes & fees

Aug 3 - Aug 4

14. Comfort Inn San Diego Old Town

Old Town San Diego, 2.9 km from Harbor Island

Angelica

₩187,715 total

includes taxes & fees

Aug 23 - Aug 24

15. Old Town Inn

3 km from Harbor Island

Marilyn

₩293,038 total

includes taxes & fees

Aug 18 - Aug 19

16. Best Western Seven Seas

5.5 km from Harbor Island

Timothy Wayne

₩197,244 total

includes taxes & fees

Aug 16 - Aug 17

17. Kings Inn San Diego

4.7 km from Harbor Island

Manuel

₩197,270 total

includes taxes & fees

Aug 23 - Aug 24

Outdoor pool, pool umbrellas, sun loungers

18. Handlery Hotel

5 km from Harbor Island

Byron

₩227,806 total

includes taxes & fees

Aug 19 - Aug 20

19. Courtyard by Marriott Old Town

Old Town San Diego, 3 km from Harbor Island

Carmen

₩252,641 total

includes taxes & fees

Aug 23 - Aug 24

Premium bedding, in-room safe, desk, laptop workspace

20. Best Western Plus Marina Gateway Hotel

11.6 km from Harbor Island

Abdelghani

₩277,037 total

includes taxes & fees

Aug 18 - Aug 19

View all properties

Where to stay in Harbor Island

Find the best Harbor Island areas and neighborhoods for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

See properties

A beach with surfers and swimmers during sunset.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

See properties

A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

See properties

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

See properties

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Mission and Pacific Beaches are top sights worth seeing.

See properties

Top Harbor Island Hotel Reviews

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

10/10 Excellent

"Staff was great, room was well kept and very comfortable"

Wyndham San Diego Bayside

8/10 Good

"I think it was a GREAT location... saw a few cockroaches. the water pressure, leaking and quality of the showers weren't that great but I do think over all for the price point the quality probably matched. The pool was clean and great, the rooms we're clean as far as I experienced. Views were great, staff was amazing, the work out area could be maintenance a little more, unfortunately some of the guests weren't that clean and kept leaving trash out. However, that's not your fault that's a reflection of personal values and ethics on the guests but I did end up cleaning up after them due to my personal values and ethics. Mini fridge in the room kind of worked but worked well enough.. TV was great in size and although some channels were available it would have been nice to be able to attach my device to the TV to watch my shows, I ended up watching them on my laptop which also was fine.. I liked all the plugs in the room so I was easily able to charge my many devices. I really do think everything was great over all and your staff is great.. the coffee downstairs is wonderful.. I think for the price you have a pretty good hospitality entity and structure over all."

Find hotels in Harbor Island, San Diego

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Harbor Island hotels

1. Hilton San Diego Airport/Harbor Island

2. Sheraton San Diego Resort

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

5. Comfort Inn San Diego Airport At The Harbor

6. Best Western Yacht Harbor Hotel

7. Humphreys Half Moon Inn

8. Sea Harbor Hotel

9. Holiday Inn Express San Diego Airport - Old Town by IHG

10. Best Western Plus Hacienda Hotel Old Town

11. Bay Club Hotel & Marina

12. Wyndham San Diego Bayside

13. Wyndham Garden San Diego Near SeaWorld

14. Comfort Inn San Diego Old Town

15. Old Town Inn

16. Best Western Seven Seas

17. Kings Inn San Diego

18. Handlery Hotel

19. Courtyard by Marriott Old Town

20. Best Western Plus Marina Gateway Hotel

Where to stay in Harbor Island

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Mission Bay

Top Harbor Island Hotel Reviews

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Frequently asked questions