Find hotels near Mission Bay, San Diego from ₩95,931

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
In two weeks

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,124 reviews)
"Great location and grounds!"
United States
Ethan
The price is ₩243,355
₩312,834 total
includes taxes & fees
Mar 2 - Mar 3
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (305 reviews)
"Great place to stay when you are in San Diego! Total beach vibes. Super clean and easy to check in. Definitely will be booking there again! "
United States
Carla
The price is ₩216,363
₩243,950 total
includes taxes & fees
Mar 2 - Mar 3
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,432 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is ₩247,675
₩360,900 total
includes taxes & fees
Mar 25 - Mar 26
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,744 reviews)
"Beautiful place. "
United States
Roxana
The price is ₩341,489
₩392,522 total
includes taxes & fees
Mar 2 - Mar 3
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (679 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ₩210,639
₩242,131 total
includes taxes & fees
Mar 5 - Mar 6
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (859 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is ₩182,876
₩210,208 total
includes taxes & fees
Mar 12 - Mar 13
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very Good, (1,347 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is ₩329,753
₩455,189 total
includes taxes & fees
Mar 2 - Mar 3
San Diego Mission Bay Resort

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,899 reviews)
"Amazing place "
United States
Richard
The price is ₩257,899
₩376,477 total
includes taxes & fees
Mar 2 - Mar 3
Bahia Resort Hotel

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very Good, (1,600 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is ₩243,355
₩355,918 total
includes taxes & fees
Mar 11 - Mar 12
Hyatt Regency Mission Bay Spa and Marina

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very Good, (283 reviews)
"Clean hotel & great location. "
United States
yardley
The price is ₩140,541
₩161,545 total
includes taxes & fees
Mar 2 - Mar 3
Best Western San Diego Pacific Beach/Mission Bay

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,170 reviews)
"Location! "
United States
Jennifer
The price is ₩304,770
₩427,052 total
includes taxes & fees
Mar 8 - Mar 9
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,421 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is ₩137,359
₩157,888 total
includes taxes & fees
Mar 3 - Mar 4
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1,952 reviews)
"Great stay"
United States
Lizeth
The price is ₩127,135
₩146,135 total
includes taxes & fees
Mar 5 - Mar 6
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very Good, (1,214 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is ₩313,913
₩354,563 total
includes taxes & fees
Mar 2 - Mar 3
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1,543 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is ₩123,103
₩139,039 total
includes taxes & fees
Mar 3 - Mar 4
SureStay Hotel by Best Western San Diego Pacific Beach

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,288 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is ₩89,274
₩102,616 total
includes taxes & fees
Mar 24 - Mar 25
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,165 reviews)
"Good location friendly staff"
United States
Anya
The price is ₩142,557
₩163,862 total
includes taxes & fees
Mar 2 - Mar 3
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,105 reviews)
"Better than last time"
United States
benjamin
The price is ₩83,461
₩95,931 total
includes taxes & fees
Mar 2 - Mar 3
E-Z 8 Motel Old Town

Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
North Pacific Beach, 3.8 km from Mission Bay
9.8 out of 10, Exceptional, (1,003 reviews)
"Great location, quiet, excellent views, amazing staff, close to restaurants, we will be back. "
United States
Tammy
The price is ₩497,653
₩572,060 total
includes taxes & fees
Mar 2 - Mar 3
Pacific Terrace Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
207 reviews
View
2 outdoor pools, a heated pool, sun loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,124 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
305 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, sun loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,432 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,744 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 46 hotels and other accommodations you'll find within a mile.
Where is the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels can I expect to find close to Mission Bay?
Expedia has 46 hotels and other accommodations within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.
Where can I learn more about changing or cancelling my trip in the area near Mission Bay?
For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.