The Best Hotels Closest to Mission Bay in San Diego for 2026

Our top choices for Mission Bay hotels

2 outdoor pools, a heated pool, sun loungers

The Dana on Mission Bay

Mission Bay, 1.6 km from Mission Bay

Jamie

₩425,534 total

includes taxes & fees

Jun 15 - Jun 16

5 outdoor pools, a heated pool, pool umbrellas, sun loungers

Paradise Point Resort & Spa

Mission Bay, 1.3 km from Mission Bay

Myesha

₩525,351 total

includes taxes & fees

Jun 18 - Jun 19

Outdoor pool, open 7:00 AM to 10:00 PM, cabanas (surcharge)

San Diego Mission Bay Resort

Mission Bay, 1.5 km from Mission Bay

Jean-Michelle

₩549,355 total

includes taxes & fees

Jun 15 - Jun 16

In-room safe, desk, laptop workspace, blackout drapes

Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 km from Mission Bay

Angeline

₩341,606 total

includes taxes & fees

Jun 16 - Jun 17

Bahia Resort Hotel

Central Mission Beach, 2 km from Mission Bay

Kenneth

₩506,357 total

includes taxes & fees

Jun 15 - Jun 16

Studio Suite, 1 King Bed, Courtyard View | View from room

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

3.2 km from Mission Bay

Angela

₩277,287 total

includes taxes & fees

Jun 14 - Jun 15

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Pacific Beach, 2.9 km from Mission Bay

Jesus

₩320,890 total

includes taxes & fees

Jun 15 - Jun 16

3 outdoor pools, cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Mission Bay, 1.9 km from Mission Bay

Yesenia

₩422,669 total

includes taxes & fees

Jun 17 - Jun 18

Comfort Inn Sea World Area

3.2 km from Mission Bay

Fernando

₩225,834 total

includes taxes & fees

Jun 16 - Jun 17

Catamaran Resort and Spa

Mission Beach, 2.9 km from Mission Bay

Claudine

₩494,355 total

includes taxes & fees

Jun 15 - Jun 16

Best Western San Diego Pacific Beach/Mission Bay

2.5 km from Mission Bay

Richard

₩244,015 total

includes taxes & fees

Jun 28 - Jun 29

Surfer Beach Hotel

Pacific Beach, 3 km from Mission Bay

Aleta

₩459,247 total

includes taxes & fees

Jun 15 - Jun 16

Desk, laptop workspace, blackout drapes, iron/ironing board

SureStay Hotel by Best Western San Diego Pacific Beach

Pacific Beach, 3 km from Mission Bay

NORALYN

₩213,162 total

includes taxes & fees

Jun 17 - Jun 18

ITH Beach Bungalow Surf Hostel

Pacific Beach, 3.2 km from Mission Bay

mike

₩115,184 total

includes taxes & fees

Jun 14 - Jun 15

Wyndham Garden San Diego Near SeaWorld

2.8 km from Mission Bay

Hector

₩207,533 total

includes taxes & fees

Jun 15 - Jun 16

Heritage Inn San Diego

2.5 km from Mission Bay

Alyssa

₩122,517 total

includes taxes & fees

Jun 21 - Jun 22

E-Z 8 Motel Old Town

Old Town San Diego, 3.1 km from Mission Bay

Ashley

₩136,368 total

includes taxes & fees

Jun 23 - Jun 24

Mission Bay Motel

Pacific Beach, 3 km from Mission Bay

Juan C

₩198,608 total

includes taxes & fees

Jun 15 - Jun 16

Pacific Terrace Hotel

North Pacific Beach, 3.8 km from Mission Bay

Phillip

₩608,587 total

includes taxes & fees

Jun 16 - Jun 17

Samesun Ocean Beach - Hostel

Ocean Beach, 4.2 km from Mission Bay

wilber A

₩101,215 total

includes taxes & fees

Jun 30 - Jul 1

View all properties

Compare popular hotels close to Mission Bay

Property	Property class	Guest rating
The Dana on Mission Bay	3.5 star property	9.0 Wonderful 4,401 reviews	View
Paradise Point Resort & Spa	4.0 star property	8.8 Excellent 2,662 reviews	View
San Diego Mission Bay Resort	4.0 star property	8.6 Excellent 1,483 reviews	View
Holiday Inn Express San Diego - SeaWorld Area by IHG	2.5 star property	9.0 Wonderful 1,007 reviews	View
Bahia Resort Hotel	3.5 star property	8.8 Excellent 2,141 reviews	View

Top Mission Bay Hotel Reviews

Heritage Inn San Diego

2/10 Terrible

"Building and rooms are old and unkempt. Carpets dirty and stained; sheets stained. Room smelled of old carpet. Left after looking at the room. Did not stay. Checked out after 5 minutes."

The Alcala Hotel Mission Valley/Seaworld

6/10 Okay

"The description of the bed on the website site was queen bed but the actual size was a full bed. The gym is almost not usable. There is no game room as described on the website. The toiletries was insufficient . The aircon in our room was so noisy everytime it runs on and I was not able to sleep because of the loud noise it was producing every few minutes .The place could use a little bit more cleaning and fixing up. The staff were great though and the breakfast was good. The price we got was good but you really get what you pay for."

Bahia Resort Hotel

10/10 Excellent

"I loved my time there! It was a solo trip and I felt safe. My room was clean and the staff was beyond courteous and helpful. Awesome, drinks, dinner, and sunset! I want to being my family there and have the experience of the bay outside our doors and the ocean within walking distance. Thank you for everything."

Crowne Plaza San Diego - Mission Valley by IHG

4/10 Poor

"When making the reservation I specifically requested a room with no perfume or fragrances. We had to check 3 different rooms before I could find one that had minimum amounts of fragrances. I then had to wipe down everything to get rid of the rest of the fragrances. The air conditioning trickled out air. Two of the rooms didn't even have working air-conditioning. Older Hotel but quaint. "

Hotels near other Mission Bay attractions

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?

See properties

Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 46 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

San Diego Mission Bay Resort is one of the top choices for your stay based on our traveler data, and this resort offers a full-service spa and 2 restaurants. It's located just a short 0.9 mi (1.5 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.8 mi (1.3 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 46 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Whaley House Museum, Maritime Museum of San Diego, or Junipero Serra Museum. Mason Street School, Casa de Machado y Stewart, and McCoy Museum House are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, San Diego Black Ensemble Theater, and Cygnet Theater Company.

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Our top choices for Mission Bay hotels

The Dana on Mission Bay

Paradise Point Resort & Spa

San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

Comfort Inn Sea World Area

Catamaran Resort and Spa

Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

Wyndham Garden San Diego Near SeaWorld

Heritage Inn San Diego

E-Z 8 Motel Old Town

Mission Bay Motel

Pacific Terrace Hotel

Samesun Ocean Beach - Hostel

Compare popular hotels close to Mission Bay

Top Mission Bay Hotel Reviews

Heritage Inn San Diego

Hotels near other Mission Bay attractions

Ski Beach

Frequently asked questions

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