Find hotels near Mission Bay, San Diego from ₩119,561

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,239 reviews)
"Beautiful bay view and very quiet. Loved that the restaurant on the marina was steps from my building. "
United States
Sara
The price is ₩298,918
₩378,123 total
includes taxes & fees
Apr 12 - Apr 13
The Dana on Mission Bay

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (332 reviews)
"Great access to the ocean and Mission Bay. "
United States
Lisa
The price is ₩343,516
₩387,315 total
includes taxes & fees
Apr 15 - Apr 16
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,759 reviews)
"Great location. Older refurbished hotel on Pacific Beach."
United States
Rachel
The price is ₩379,534
₩436,255 total
includes taxes & fees
Apr 12 - Apr 13
The Wayfarer San Diego

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (999 reviews)
"Great location for Sea World theme park. . Friendly and courteous staff. Parking was easily accessible. Breakfast was great. "
United States
Maritza
The price is ₩223,813
₩257,261 total
includes taxes & fees
Apr 12 - Apr 13
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (803 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is ₩261,185
₩300,219 total
includes taxes & fees
Apr 12 - Apr 13
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very Good, (1,395 reviews)
"Great location, better weather, even better staff. The amenities, pool beds & rentals were easy to reserve, the food was expensive but very good & the bungalows are breezy and cool. I will absolutely be coming back here for my next stay in San Diego"
United States
Dalvyn
The price is ₩313,939
₩440,296 total
includes taxes & fees
Apr 12 - Apr 13
San Diego Mission Bay Resort

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,001 reviews)
"lovely beach vibe. perfect little getaway spot. close to plenty of restaurants and bars and cute little shops. This will be our first pick if we visit the area again"
United States
John Adam W
The price is ₩245,578
₩282,274 total
includes taxes & fees
Apr 13 - Apr 14
The Beach Cottages

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,964 reviews)
"Good resort. The beach and gardens were calm and clean. Wish we had a few more days to just relax on the Bay front."
United States
Darren
The price is ₩269,026
₩392,720 total
includes taxes & fees
Apr 12 - Apr 13
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (873 reviews)
"Great property right off the freeway. Close to playground and mission bay. A few minute drive to plenty of food option in pacific beach Traffic can be noisy since it’s right off the freeway"
United States
Christopher
The price is ₩195,273
₩224,457 total
includes taxes & fees
Apr 26 - Apr 27
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very Good, (337 reviews)
"Everything is freshly renewed, smells great , breakfast included & close to alot of things! Mission Bay is across the bridge with lots of play area for the littles! Loved it "
United States
Blanca
The price is ₩157,970
₩181,579 total
includes taxes & fees
Apr 15 - Apr 16
Best Western San Diego Pacific Beach/Mission Bay

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,561 reviews)
"Very convenient location, friendly staff, breakfast was good! great gym too! we were really close to Seaworld."
United States
Alexander
The price is ₩166,689
₩191,600 total
includes taxes & fees
Apr 29 - Apr 30
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (2,011 reviews)
"If you need a place to lay your head and have breakfast in the morn, this works. Small rooms. First floor smells like a marijuana farm. Only benefit is that it’s central to La Jolla- Old Town- Pacific Beach areas. Probably won’t stay here again unless I have to. "
United States
Christine
The price is ₩144,788
₩166,427 total
includes taxes & fees
Apr 12 - Apr 13
GreenTree Inn San Diego Mission Bay

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very Good, (1,242 reviews)
"Staff was super friendly. They upgraded us to an oceanfront room for free since they had availabilities, I didn't even ask for it! Location is perfect, right on the beach in the middle of all the action. Fell asleep listening to the waves"
United States
Melanie
The price is ₩331,964
₩374,939 total
includes taxes & fees
Apr 21 - Apr 22
Surfer Beach Hotel

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1,560 reviews)
"Rooms are small but clean and comfy, breakfast was good, personnel was friendly. Location is close to all SD activities."
United States
Polina
The price is ₩164,104
₩185,348 total
includes taxes & fees
Apr 15 - Apr 16
SureStay Hotel by Best Western San Diego Pacific Beach

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,362 reviews)
"We had a great stay 10/10/25-10/12/25…The hotel is in a great location to get to Mission Beach, Sea World, and the Downtown Harbor Blvd locations…The hotel was very clean, the hot tub was so relaxing, and the staff were so friendly.."
United States
Regina
The price is ₩104,015
₩119,561 total
includes taxes & fees
Apr 12 - Apr 13
Heritage Inn San Diego

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very Good, (257 reviews)
"What an amazing bunch of people running the most comfortable place in all of San Diego. "
United States
Jerry
The price is ₩184,097
₩207,569 total
includes taxes & fees
Apr 13 - Apr 14
ITH Beach Bungalow Surf Hostel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,210 reviews)
"Very nice location, great view of Mission Bay. Easy walking distance to off site restaurants and pacific ocean beach. Hotel is very dated, room service fine, however, we stayed 10 days and never experienced room cleaning. "
United States
John
The price is ₩319,274
₩447,376 total
includes taxes & fees
Apr 12 - Apr 13
Catamaran Resort and Spa

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,222 reviews)
"We stayed one night due to a delayed flight. The place was clean & tidy, the pool was fantastic. Staff was amazing. Great for a short budget friendly stay. "
United States
Karla
The price is ₩147,984
₩170,099 total
includes taxes & fees
Apr 9 - Apr 10
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,098 reviews)
"Yes my dog was comfortable. Yes the shuttle was very convenient. Room was clean staff friendly. Will recommend to family and friends "
United States
Losi
The price is ₩105,192
₩120,919 total
includes taxes & fees
Apr 9 - Apr 10
E-Z 8 Motel Old Town

Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
North Pacific Beach, 3.8 km from Mission Bay
9.8 out of 10, Exceptional, (1,001 reviews)
"The room was beautiful and the ocean views are amazing! Stay here often and always have a wonderful trip! Bikes are great too!!"
United States
Julie
The price is ₩464,483
₩533,934 total
includes taxes & fees
May 6 - May 7
Pacific Terrace Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet friendly
WiFi included
2 outdoor pools, a heated pool, sun loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,239 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
332 reviews
View
View from property
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,759 reviews
View
In-room safe, desk, laptop workspace, blackout drapes
Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
9.0
Wonderful
999 reviews
View
Front of property
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
9.2
Wonderful
803 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 51 hotels and other accommodations you'll find within a mile.
Where is the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels can I expect to find close to Mission Bay?
Expedia has 51 hotels and other accommodations within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.
Where can I learn more about changing or cancelling my trip in the area near Mission Bay?
For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.