The Best Hotels Closest to Mission Bay in San Diego for 2026

Our top choices for Mission Bay hotels

2 outdoor pools, a heated pool, sun loungers

The Dana on Mission Bay

Mission Bay, 1.6 km from Mission Bay

René

₩385,436 total

includes taxes & fees

May 25 - May 26

ITH Mission Beach Backpacker Hostel

Central Mission Beach, 2.4 km from Mission Bay

Jessi

₩220,435 total

includes taxes & fees

May 27 - May 28

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Mission Beach, 2.4 km from Mission Bay

John

₩395,680 total

includes taxes & fees

May 25 - May 26

5 outdoor pools, a heated pool, pool umbrellas, sun loungers

Paradise Point Resort & Spa

Mission Bay, 1.3 km from Mission Bay

Raymond

₩457,060 total

includes taxes & fees

May 25 - May 26

The Wayfarer San Diego

Mission Beach, 3 km from Mission Bay

Michael

₩445,657 total

includes taxes & fees

Jun 2 - Jun 3

Outdoor pool, open 7:00 AM to 10:00 PM, cabanas (surcharge)

San Diego Mission Bay Resort

Mission Bay, 1.5 km from Mission Bay

Krystal

₩366,858 total

includes taxes & fees

May 25 - May 26

In-room safe, desk, laptop workspace, blackout drapes

Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 km from Mission Bay

alyssa

₩261,547 total

includes taxes & fees

May 31 - Jun 1

Breakfast, lunch, dinner served; Mediterranean cuisine

Bahia Resort Hotel

Central Mission Beach, 2 km from Mission Bay

Anniesse

₩375,914 total

includes taxes & fees

May 25 - May 26

Studio Suite, 1 King Bed, Courtyard View | View from room

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

3.2 km from Mission Bay

Joseph

₩251,712 total

includes taxes & fees

May 28 - May 29

3 outdoor pools, cabanas (surcharge), pool umbrellas

Hyatt Regency Mission Bay Spa and Marina

Mission Bay, 1.9 km from Mission Bay

Hanna

₩404,417 total

includes taxes & fees

May 25 - May 26

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Pacific Beach, 2.9 km from Mission Bay

Jesus

₩204,612 total

includes taxes & fees

May 28 - May 29

Catamaran Resort and Spa

Mission Beach, 2.9 km from Mission Bay

Stephanie

₩385,539 total

includes taxes & fees

May 25 - May 26

Comfort Inn Sea World Area

3.2 km from Mission Bay

Parley Vinn Anastacius

₩179,798 total

includes taxes & fees

May 25 - May 26

Best Western San Diego Pacific Beach/Mission Bay

Bay Park, 2.5 km from Mission Bay

Bernadette

₩149,904 total

includes taxes & fees

Jun 8 - Jun 9

Surfer Beach Hotel

Pacific Beach, 3 km from Mission Bay

Jonathan

₩351,672 total

includes taxes & fees

May 25 - May 26

GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Victoria

₩159,855 total

includes taxes & fees

May 27 - May 28

Desk, laptop workspace, blackout drapes, iron/ironing board

SureStay Hotel by Best Western San Diego Pacific Beach

Pacific Beach, 3 km from Mission Bay

Michael

₩172,428 total

includes taxes & fees

May 27 - May 28

ITH Beach Bungalow Surf Hostel

Pacific Beach, 3.2 km from Mission Bay

Xihao

₩102,690 total

includes taxes & fees

Jun 10 - Jun 11

Heritage Inn San Diego

2.5 km from Mission Bay

Latrice

₩121,548 total

includes taxes & fees

May 25 - May 26

Wyndham Garden San Diego Near SeaWorld

2.8 km from Mission Bay

Luis

₩163,083 total

includes taxes & fees

May 28 - May 29

View all properties

Compare popular hotels close to Mission Bay

Property	Property class	Guest rating
The Dana on Mission Bay	3.5 star property	9.0 Wonderful 4,363 reviews	View
Paradise Point Resort & Spa	4.0 star property	8.8 Excellent 2,598 reviews	View
ITH Mission Beach Backpacker Hostel	2.0 star property	9.4 Exceptional 214 reviews	View
San Diego Mission Bay Resort	4.0 star property	8.6 Excellent 1,443 reviews	View
Boardwalk Hotel: Bikes, Boards & Beach Gear Included	3.0 star property	9.4 Exceptional 368 reviews	View

Top Mission Bay Hotel Reviews

Paradise Point Resort & Spa

10/10 Excellent

"We had such a wonderful stay at Paradise Point Resort & Spa! The beach access was beautiful and made it so easy to relax and enjoy the peaceful atmosphere. We especially loved spending time at the pools — they were clean, fun, and perfect for both relaxing and family time. The resort had so many great amenities that made our trip feel like a true getaway. We would definitely love to come back again!"

Comfort Inn Sea World Area

8/10 Good

"Wonderful service. Very friendly staff. They work hard. The breakfast was a little on the lean cheap side. I was in a wheelchair and it was very congested to try and get into the dining area and get your food. One area of concern, in front of our handicapped room is about a 12-in drop off on the other side of the walkway. An electric wheelchair or a regular wheelchair could it go off accidentally and hurt someone. Or someone could step off and hurt themselves. Maybe needs a rail there. Could be a huge liability to the property."

The Dana on Mission Bay

8/10 Good

"Clean rooms, nicely maintained outdoor landscaping. Nice property. A little tired in the overall resort, but staff was very helpful. Rooms clean. Housekeeping very thorough. Surprised to hear the bar closes early. Arrived after 9PM, and thought we'd go in for a glass a wine, but they had closed for the night. Strange. Overall, a nice stay. Close to the marina where we were sailing out of."

Ocean Park Inn

4/10 Poor

"The staff apparently are not on the same page one staff member said he was gonna refund the parking never happen then I called again and talked to Jonathan who said the person that authorized that can’t do that and he was rude about it and uncompromising on the situation. Along with the night time guy don’t know if he was a manager or what but he would walk behind all the sliding doors 4 or five times a night was odd specially when are sliding glass door was open"

San Diego Mission Bay Resort

8/10 Good

"Overall great experience. The rooms at this resort are starting to look a little dated. The TV in my room was leaning so far forward it was hard to see and looked like it might fall over; maintenance did correct his during my stay. The resorts pool area is gorgeous and the conference facilities are very very nice."

Hotels near other Mission Bay attractions

Mission Bay Park

4.5/5 (168 reviews)

Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area, or enjoy its surfing spots.

See properties

Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 44 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 44 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, San Diego Black Ensemble Theater, and Cygnet Theater Company.

Explore a world of travel with Expedia

Flights to San Diego Intl.

Find hotels near Mission Bay, San Diego from ₩102,690

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Our top choices for Mission Bay hotels

The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Paradise Point Resort & Spa

The Wayfarer San Diego

San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Catamaran Resort and Spa

Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Compare popular hotels close to Mission Bay

Top Mission Bay Hotel Reviews

Paradise Point Resort & Spa

Hotels near other Mission Bay attractions

Mission Bay Park

Frequently asked questions

Explore a world of travel with Expedia