Top 10 Hotels in Southeast Minnesota, MN from ₩80,911 - Competitive Prices

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Our top choices for Southeast Minnesota hotels

A modern dining area with high tables, chairs, and pendant lighting.

A hotel room with two beds, a desk with a computer, a chair, and a window with a view.

A swimming pool with a tiled deck, sun loungers, and a lifeguard chair.

A reception desk with a large digital screen displaying a cityscape and the word "happy."

1. Hampton Inn & Suites Rochester-North

Rochester

Dr. Tim

₩132,675

₩152,743 total

includes taxes & fees

Oct 24 - Oct 25

A modern indoor patio with a fire feature, seating, and large windows.

A reception area with a curved reception desk, wooden shelving, and a green moss wall with the text "I ♥ EVEN".

A modern interior with a seating area, a bookshelf, and a window with a view of trees.

A modern living room with a fireplace, large windows, and a flat-screen TV mounted on the wall.

2. EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kutzky Park

Rici

₩165,877

₩209,345 total

includes taxes & fees

Oct 23 - Oct 24

A Comfort Inn hotel with a stone facade, a covered entrance, and a parking area.

A spacious living room with a stone fireplace, blue sofas, and a flat-screen TV.

A modern dining area with wooden tables and chairs, a kitchen with granite countertops, and a view of the outdoors through large windows.

A spacious lobby with a central seating area, a reception desk, and a fireplace.

3. Comfort Inn & Suites West - Medical Center

Rochester

yuan

₩117,079

₩134,787 total

includes taxes & fees

Oct 10 - Oct 11

A hotel room with a large bed, a desk with a chair, a window with a view of the outdoors, and two bedside lamps.

A hotel room with a desk, a television mounted on the wall, a microwave, a lamp, a chair, and a refrigerator.

A swimming pool with a clear blue water surface, surrounded by a tiled deck and a few chairs.

A gym with treadmills, elliptical machines, and a stationary bike.

4. Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

Darlene

₩106,270

₩122,343 total

includes taxes & fees

Nov 1 - Nov 2

A modern hotel lobby with a reception desk, seating area, and a dining space.

A hotel room with a bed, desk, chair, and a bathroom.

A modern hotel room with a wooden desk, orange chair, dark sofa, and a small table.

A modern breakfast area with a counter displaying various food items, a water dispenser, and a sign indicating a bakery section.

5. Holiday Inn Express Rochester South - Mayo Area by IHG

Rochester

Melissa

₩135,750

₩156,282 total

includes taxes & fees

Oct 18 - Oct 19

A coffee shop interior with a wooden counter, menu boards, and seating area.

A hotel exterior with a 'Townplace Suites' sign, outdoor seating area, and 'OPEN' signage.

An outdoor seating area with tables and chairs, a neon sign, and flower arrangements.

6. TownePlace Suites by Marriott Rochester Mayo Clinic Area

Kutzky Park

Hafsa

₩186,272

₩214,446 total

includes taxes & fees

Oct 17 - Oct 18

A modern living room with a flat-screen TV, a fireplace, comfortable seating, and a large window with a city view.

A modern hotel entrance with a glass facade, illuminated signage, and a covered walkway.

A spacious lobby with modern furniture, a spiral staircase, and large windows offering views of the outdoors.

A modern hotel lobby with a curved staircase, seating areas, and large windows.

7. Hilton Rochester Mayo Clinic Area

Downtown Rochester

Raymond

₩244,166

₩281,096 total

includes taxes & fees

Oct 17 - Oct 18

A self-service breakfast station with a waffle maker, coffee machines, and a variety of condiments.

A hotel lobby with leather sofas, a stone fireplace, and a patterned carpet.

A compact laundry area with a washing machine, dryer, and a water fountain.

A reception area with a wooden reception desk, a red doormat, and framed awards on the wall.

8. Econo Lodge Mayo Clinic Area

Rochester

Ashley

₩95,747

₩110,228 total

includes taxes & fees

Nov 1 - Nov 2

An outdoor seating area with a fire feature, blue cushioned chairs, and a modern building with large windows in the background.

A modern dining area with round tables and chairs, a large painting on the wall, and a flat-screen TV mounted above a geometric-patterned wall.

A modern Hyatt House hotel with a prominent 'Hyatt House' sign, multiple floors, and a parking garage.

A modern bar area with seating and a counter.

9. Hyatt House Rochester/Mayo Clinic Area

Downtown Rochester

Kathy

₩160,439

₩184,706 total

includes taxes & fees

Oct 17 - Oct 18

A restaurant with wooden tables and bar stools, a bar area with a counter, and multiple televisions mounted on the walls.

A modern kitchen with wooden cabinets, a microwave, an oven, and a dishwasher.

A hotel room with two beds, a desk, a chair, and a mirror.

A bar with wooden stools and a neon sign.

10. AmericInn by Wyndham Rochester Near Mayo Clinic

Rochester

Jeanne

₩104,802

₩120,654 total

includes taxes & fees

Oct 29 - Oct 30

A reception area with a wooden reception desk, a "Welcome to the Bread & Butter State" sign, and a "Please Center" sign.

A hotel room with a bed, a desk, a chair, a TV, and a bathroom visible through an open door.

A pool area with a table and chairs, a lifeguard chair, and a pool lift.

A coffee station with four coffee dispensers, a stack of disposable cups, and a tray with various coffee-related items.

11. Hampton Inn Rochester-South

Rochester

dennis

₩143,596

₩165,316 total

includes taxes & fees

Oct 18 - Oct 19

A spacious outdoor dining area with modern furniture and large windows offering views of the city.

A modern interior with a wooden ceiling, a large black shelving unit, and a refrigerator stocked with beverages.

A modern hotel room with a large bed, a sofa, a small table, a desk, and a wardrobe.

A reception desk with a modern design, featuring a wooden panel and a wall adorned with framed botanical artwork.

12. Hotel Indigo Rochester – Mayo Clinic Area by IHG

Downtown Rochester

thomas

₩145,483

₩167,496 total

includes taxes & fees

Oct 23 - Oct 24

A swimming pool with a glass ceiling, a neon sign for the KAFFLER HOTEL, and a view of the city skyline at dusk.

A bar area with a long counter, multiple bar stools, and a television mounted above the bar.

A hotel room with a large bed, a desk, a chair, a microwave, and a framed picture on the wall.

A banquet hall with round tables, chairs, chandeliers, and a fireplace.

13. Kahler Grand Hotel

Downtown Rochester

Maria

₩194,258

₩223,648 total

includes taxes & fees

Oct 3 - Oct 4

An outdoor patio area with a concrete floor, wooden fence, and string lights.

A breakfast bar with a wooden counter, a coffee machine, and a refrigerator.

A Fairfield Inn & Suites hotel with a modern design, featuring a prominent entrance and a parking area.

A modern living room with a stone fireplace, a blue armchair, a round coffee table, and a large window offering a view of the outdoors.

14. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

Kutzky Park

Jon

₩163,974

₩188,775 total

includes taxes & fees

Oct 8 - Oct 9

An indoor swimming pool with a curved design, surrounded by palm trees and a white pool ladder.

A hotel room with a large bed, a desk, a chair, and a view of the outdoors through the window.

A modern hotel with a prominent neon sign, multiple floors, and a well-maintained lawn area.

A modern hotel lobby with a reception desk, a digital information kiosk, and a patterned floor.

15. Treasure Island Resort & Casino

Welch

Bill

₩110,976

₩138,839 total

includes taxes & fees

Oct 4 - Oct 5

A modern hotel lobby with a reception desk, seating area, and a kitchenette.

A small, well-organized pantry with shelves stocked with snacks and beverages.

A hotel room with a large bed, a desk, a chair, and a kitchenette.

A modern hotel lobby with a reception desk, seating area, and a large window providing natural light.

16. Spark by Hilton Rochester South

Rochester

Kimberly

₩118,181

₩136,056 total

includes taxes & fees

Nov 1 - Nov 2

An outdoor seating area with wooden pillars, colorful striped cushions, and potted plants.

A modern lounge area with a sofa, chairs, and tables.

A modern restaurant with a counter, seating area, and a TV screen.

An indoor swimming pool with wooden ceiling beams, yellow chairs, and tables along the sides.

17. Home2 Suites by Hilton Rochester Mayo Clinic Area

Rochester

Vickie

₩166,122

₩191,249 total

includes taxes & fees

Oct 24 - Oct 25

An outdoor patio area with yellow umbrellas, wicker furniture, and a sign for Centerstone Plaza Hotel.

A modern reception area with a wooden reception desk, glass pendant lights, and a long hallway with seating.

A modern living room with a dark wall, a decorative light fixture, and a patterned wall art piece.

A garden with a water feature, rocks, and yellow umbrellas.

18. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

Historic Southwest

Van

₩146,415

₩168,560 total

includes taxes & fees

Oct 3 - Oct 4

A room with a fireplace, two leather armchairs, a sofa, and a large window providing a view of the outdoors.

A reception area with a curved counter, ceiling lights, and a potted plant.

A long, narrow hotel corridor with a carpeted floor, light fixtures along the walls, and a ceiling with recessed lighting.

A paved garden area with two benches, a potted plant with yellow flowers, and a variety of greenery.

19. Brentwood Inn & Suites

Downtown Rochester

Daniel

₩127,467

₩146,747 total

includes taxes & fees

Oct 3 - Oct 4

A modern kitchen with dark wooden cabinets, a stainless steel refrigerator, a microwave, and a coffee maker. There is a dining area with two red chairs and a table.

A compact hotel room with a kitchenette, a bed, a TV, and a seating area.

A compact hotel room with a kitchenette, a dining area, a seating area with a sofa and armchairs, and a large window with curtains.

An outdoor patio area with stone walls, outdoor seating, and landscaped gardens.

20. Staybridge Suites Rochester - Commerce Dr NW by IHG

Rochester

MATTHEW

₩188,991

₩217,575 total

includes taxes & fees

Oct 23 - Oct 24

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Vacation Rentals in Southeast Minnesota

Aparthotel

A spacious living area with a modern staircase, leather sofas, and contemporary lighting.

A modern interior with a large dining table, sofas, and a kitchen area.

A modern pool table in a spacious, well-lit room with large windows and a bar area.

A rooftop pool area with lounge chairs and umbrellas, surrounded by a modern building with a brick facade.

The Berkman

Folwell

"Excellent service and wonderful room!"

Apartment

A bedroom with a large bed, a TV on a dresser, and a view of the city through large windows.

A multi-story building with the sign 'Broadway Plaza' indicating a commercial or hotel property.

An indoor swimming pool with a clock on the wall, lounge chairs, and a lifeguard warning sign.

Broadway Plaza, Trademark Collection by Wyndham

Downtown Rochester

"As always excellent staff, clean and comfortable rooms. Great central location. "

Apartment

A two-story building with a green exterior, a covered porch, and a driveway leading to a garage.

A room with a large window, a flat-screen TV mounted on the wall, a fluffy chair, a small round table, and a chair with a basket.

A modern kitchen with stainless steel appliances, wooden cabinets, and a dishwasher.

A cozy room with a sofa bed, a small side table, and a window with blinds.

Northfield Apt Close to Downtown: Winter Walk

Northfield

"It was amazing!"

Apartment

A bedroom with a bed, a chair, a table, a fireplace, and a ceiling fan.

A kitchen with wooden cabinets, stainless steel appliances, and a dining table with chairs.

A living room with a fireplace, a television mounted above it, and a large window offering a view of the outdoors.

A wooden deck with Adirondack chairs lined up against a building with a flag.

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Wabasha

"Great property! Very convenient location as well."

Cottage

A modern interior with a stone fireplace, wooden walls, a leather sofa, and a dining area.

A cozy interior with a wooden ceiling, a fireplace, a red sofa, a leather couch, and a foosball table.

A kitchen with wooden cabinets, a stove, a sink, and a window with a view of trees.

A bedroom with a wooden bed, a desk, a lamp, and large windows with a view of trees.

Pet-friendly Cabin Retreat: Walk to Lake Pepin!

Pepin

"What a fun place! Plenty of room. We played foosball had a fire outside. We enjoyed the fireplace too. We hadn’t anticipated no TV though. You might want to add that to your description. The water is definitely smelly, so we truly appreciated the 40 bottles of water you provided. Definitely a great place for a girl’s weekend or family reunion!"

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Stay near popular Southeast Minnesota attractions

A cave with a reflective pool and illuminated walls.

Forestville Mystery Cave State Park

9.0/10 (22 reviews)

Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.

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A courtyard with a stone fountain, yellow buildings with arches, and a clear sky.

Villa Bellezza

8.4/10 (31 reviews)

You can enjoy a tasting or tour at Villa Bellezza during your travels to Pepin. While you're in the area, stroll along the lakeside.

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Mayo Civic Center

9.2/10 (818 reviews)

Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.

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Apache Mall

8.6/10 (1,101 reviews)

During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Rochester Recreation Center

8.0/10 (205 reviews)

Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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National Volleyball Center

7.8/10 (151 reviews)

Catch an event at National Volleyball Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

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Welch Village Ski Area

8.6/10 (16 reviews)

Hit the slopes in Welch with a visit to Welch Village Ski Area. Stroll along the area's riverfront or simply enjoy its coffeehouses.

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Shattuck-St. Mary's School

9.6/10 (69 reviews)

Enjoy the collegiate vibe when you visit Shattuck-St. Mary's School, during your trip to Faribault. Visit the shops in this family-friendly area, or simply enjoy its coffeehouses.

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Learn more about Southeast Minnesota

Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.

See all hotels in Southeast Minnesota

A lake surrounded by dense forest and a distant hill with a fort.

Top Southeast Minnesota Hotel Reviews

EVEN Hotel Rochester - Mayo Clinic Area by IHG

10/10 Excellent

"Love this hotel! Within close proximity to Mayo Clinic. Very clean, comfortable beds and great amenities. Our number one go to when we stay in Rochester."

Kahler Inn and Suites - Mayo Clinic Area

8/10 Good

"Overall it was a good stay. Pros: this hotel has the underground tunnel connected to the hospital so it was easy walking over, expecially since there is massive construction going on right there. Hotel was clean, staff was wonderful, breakfast was a good variety and good. Rooms were quiet, never heard any of the construction! A detail I may have missed or it wasn’t added in the description was if you parked in there ramp it was 17 dollars a night. Cons: defiantly needs some updating, but biggest con was the room we had was definitely not handicap accessible at all for the bathroom. Being “connect” to the hospital and the amount of the elderly I would think it would have something there. Toilet was so low almost ment for a child, and extremely tiny room, no grab bars, and step in shower/tub. I would stay here again, most definitely but not if I had elderly with me again"

Express Suites Riverport Inn & Suites

10/10 Excellent

"We alway stay at Riverport when in Winona! Staff is kind and the breakfast is great! And it’s in close proximity to campus!"

Brentwood Inn & Suites

10/10 Excellent

"Staff was very helpful and kind. Desk chair worn and could use a replacement-normally would not care but was working remote while there. Wi-Fi great"

Kahler Grand Hotel

10/10 Excellent

"Perfect for the outpatient setting for Mayo. Definitely recommend using valet for just a little more it’s worth it and so easy!"

La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S

10/10 Excellent

"The employees are very helpful in every way possible"

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

10/10 Excellent

"there staff supper nice, i will come back"

Country Inn & Suites by Radisson, Albert Lea - Austin

10/10 Excellent

"Breakfast was awesome"

AmericInn by Wyndham Rochester Near Mayo Clinic

10/10 Excellent

"Our stay was great , free shuttle to Mayo Clinic was great!"

More cheap stays in Southeast Minnesota

Birch Hill Suite Rochester – Med City

3595 Commercial Drive SW Rochester MN

₩78,789

₩90,708 total

Oct 4 - Oct 5

includes taxes & fees

7.6/10 Good! (87 reviews)

Med City Inn & Suites - Mayo Clinic Area

435 16th Ave Nw Rochester MN

₩96,925

₩111,584 total

Oct 4 - Oct 5

includes taxes & fees

7.8/10 Good! (1,026 reviews)

Country Inn & Suites by Radisson, Albert Lea - Austin

2214 E Main St Albert Lea MN

₩103,792

₩114,560 total

Nov 1 - Nov 2

includes taxes & fees

8.6/10 Excellent! (1,001 reviews)

Boarders Inn & Suites by Cobblestone Hotels - Faribault

1801 Lavender Dr Faribault MN

₩116,053

₩128,094 total

Oct 11 - Oct 12

includes taxes & fees

7.8/10 Good! (1,009 reviews)

Brentwood Inn & Suites

123 Fourth Ave. NW Rochester MN

₩127,467

₩146,747 total

Oct 3 - Oct 4

includes taxes & fees

8.8/10 Excellent! (1,005 reviews)

Cobblestone Hotel & Suites - Austin

1000 16th Avenue NW Austin MN

₩145,388

₩161,203 total

Oct 13 - Oct 14

includes taxes & fees

Hotels in Southeast Minnesota with star-rating

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Book Hotels in Southeast Minnesota on Expedia.com

Find hotels in Southeast Minnesota, MN from ₩80,911

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Southeast Minnesota

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Southeast Minnesota hotels

1. Hampton Inn & Suites Rochester-North

2. EVEN Hotel Rochester - Mayo Clinic Area by IHG

3. Comfort Inn & Suites West - Medical Center

4. Comfort Inn & Suites Rochester South Mayo Clinic

5. Holiday Inn Express Rochester South - Mayo Area by IHG

6. TownePlace Suites by Marriott Rochester Mayo Clinic Area

7. Hilton Rochester Mayo Clinic Area

8. Econo Lodge Mayo Clinic Area

9. Hyatt House Rochester/Mayo Clinic Area

10. AmericInn by Wyndham Rochester Near Mayo Clinic

11. Hampton Inn Rochester-South

12. Hotel Indigo Rochester – Mayo Clinic Area by IHG

13. Kahler Grand Hotel

14. Fairfield Inn & Suites Rochester Mayo Clinic Area/St. Marys

15. Treasure Island Resort & Casino

16. Spark by Hilton Rochester South

17. Home2 Suites by Hilton Rochester Mayo Clinic Area

18. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

19. Brentwood Inn & Suites

20. Staybridge Suites Rochester - Commerce Dr NW by IHG

Vacation Rentals in Southeast Minnesota

The Berkman

Broadway Plaza, Trademark Collection by Wyndham

Northfield Apt Close to Downtown: Winter Walk

Pet-friendly Wabasha Studio: Boat, Ski & Explore!

Pet-friendly Cabin Retreat: Walk to Lake Pepin!

Stay near popular Southeast Minnesota attractions

Forestville Mystery Cave State Park

Villa Bellezza

Mayo Civic Center

Apache Mall

Rochester Recreation Center

National Volleyball Center

Welch Village Ski Area

Shattuck-St. Mary's School

Learn more about Southeast Minnesota

Top Southeast Minnesota Hotel Reviews

EVEN Hotel Rochester - Mayo Clinic Area by IHG

Kahler Inn and Suites - Mayo Clinic Area

Express Suites Riverport Inn & Suites

Brentwood Inn & Suites

Kahler Grand Hotel

La Quinta Inn & Suites by Wyndham Rochester Mayo Clinic S

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

Country Inn & Suites by Radisson, Albert Lea - Austin

AmericInn by Wyndham Rochester Near Mayo Clinic

More cheap stays in Southeast Minnesota

Birch Hill Suite Rochester – Med City

Med City Inn & Suites - Mayo Clinic Area

Country Inn & Suites by Radisson, Albert Lea - Austin

Boarders Inn & Suites by Cobblestone Hotels - Faribault

Brentwood Inn & Suites

Cobblestone Hotel & Suites - Austin

Hotels in Southeast Minnesota with star-rating

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