Photo by Rebecca Friedland

Find hotels in Mission Bay, San Francisco from ₩60,534

Most hotels are fully refundable. Because flexibility matters.

Save an average of 15% on thousands of hotels with Expedia Rewards.

Search over 2.9 million properties and 550 airlines worldwide

Filter by

Popular filters
Popular filters
Price per night
Guest rating
Guest rating
Star rating
Payment type
Payment type
Property type
Property type
Neighborhood
Neighborhood
Popular locations
Popular locations
Meal plans available
Meal plans available
Amenities
Amenities
Accessibility
Accessibility
Traveler experience
Traveler experience

Discover 4,892 Mission Bay hotels and places to stay, with room rates, reviews, and availability. Most hotels are fully refundable.

Lobby sitting area
Hotel Riu Plaza Fisherman's Wharf
4.0 star property
8.8 out of 10, Excellent, (6164)
"Great place!"
The price is ₩181,929
per night
May 21 - May 22
Hotel Riu Plaza Fisherman's Wharf
Bar (on property)
DoubleTree by Hilton San Francisco South Airport Blvd
4.0 star property
8.4 out of 10, Very Good, (1568)
"convinced "
The price is ₩170,969
per night
Jun 8 - Jun 9
DoubleTree by Hilton San Francisco South Airport Blvd
Outdoor pool, open 9:00 AM to 7:00 PM, sun loungers
Holiday Inn Golden Gateway, an IHG Hotel
3.5 star property
8.8 out of 10, Excellent, (2529)
"Great property, loved it. Front desk staff ( Asian lady ) when we checked needs to change her attitude. She doesn’t necessarily belong to hospitality industry. General Manager should take note. This industry is all about people and if you’re not accommodating at the front desk, there is an issue with guest service. "
The price is ₩195,667
per night
May 22 - May 23
Holiday Inn Golden Gateway, an IHG Hotel
Save an average of 15% on thousands of hotels when you're signed in
Lobby
Parc 55 San Francisco - A Hilton Hotel
4.0 star property
8.6 out of 10, Excellent, (1019)
"All was good"
The price is ₩181,272
per night
Jun 8 - Jun 9
Parc 55 San Francisco - A Hilton Hotel
Property grounds
Hotel Zephyr San Francisco
4.0 star property
8.6 out of 10, Excellent, (1497)
"Friendly staff, so much to do in the game rooms! The fire pits are a great touch, and its walking distance to pier 39."
The price is ₩235,348
per night
May 29 - May 30
Hotel Zephyr San Francisco
Terrace/patio
Club Quarters Hotel in San Francisco
4.0 star property
8.8 out of 10, Excellent, (1592)
"Very nice hotel staff, clean rooms. Everything was great. "
The price is ₩161,610
per night
May 26 - May 27
Club Quarters Hotel in San Francisco
Exterior
LUMA Hotel San Francisco
4.0 star property
9.4 out of 10, Exceptional, (1105)
"We love the property, the room and the amenities. The service was incredible, the only thing missing is a proper restaurant. The bar at the top has great food, but we had 2 kids with us. We still had a great time and food, but a proper restaurant would have been nice. "
The price is ₩252,451
per night
May 24 - May 25
LUMA Hotel San Francisco
Terrace/patio
Hyatt Centric Fisherman's Wharf San Francisco
4.0 star property
8.6 out of 10, Excellent, (1397)
"Amazing!"
The price is ₩224,401
per night
May 22 - May 23
Hyatt Centric Fisherman's Wharf San Francisco
Suite, 1 Bedroom, Kitchen | Private kitchen | Coffee/tea maker, eco-friendly cleaning products
Executive Hotel Vintage Court
3.0 star property
8.6 out of 10, Excellent, (1001)
"I liked location a lot. Very restricred view. Not good wifi. Excellent personal service"
The price is ₩148,803
per night
May 27 - May 28
Executive Hotel Vintage Court
Superior Room | Blackout drapes, iron/ironing board, free WiFi, bed sheets
SF Central Hotel
2.0 star property
6.2 out of 10, (519)
"Really nice experience and Linda was really helpfull all my stay "
The price is ₩92,606
per night
May 15 - May 16
SF Central Hotel
Exterior
Hotel Aluxor SFO
2.5 star property
8.8 out of 10, Excellent, (1030)
"Surprisingly Nice"
The price is ₩136,488
per night
May 19 - May 20
Hotel Aluxor SFO
Exterior
Holiday Inn Express and Suites Fisherman's Wharf, an IHG Hotel
3.0 star property
9.0 out of 10, Wonderful, (1650)
"Spent Mother's Day at Holiday Inn Express Fisherman's Wharf and it was great. Loved the fact that I could add parking to my hotel cost prior to arriving at hotel. Normally the Valet parking is $65 but paid $40 and the valet still parked the car which was fine. It's walking distance to Fisherman's Wharf and Pier 39. There's an Applebees restaurant and other restaurants nearby. Will stay there again. Was only there for one night since a friend was in SF for a couple of days. "
The price is ₩180,616
per night
May 20 - May 21
Holiday Inn Express and Suites Fisherman's Wharf, an IHG Hotel
Exterior
Hyatt Place San Francisco Downtown
3.0 star property
9.0 out of 10, Wonderful, (1229)
"We were told that the inside restaurant had recently reopened & were very disappointed to find that it wasn’t. "
The price is ₩258,554
per night
May 27 - May 28
Hyatt Place San Francisco Downtown
Exterior
Handlery Union Square Hotel
3.5 star property
8.8 out of 10, Excellent, (1856)
"We had a great stay at the Handlery. The staff were efficient, and friendly. We enjoyed our room and the location was great. We’ll be back. "
The price is ₩190,194
per night
May 20 - May 21
Handlery Union Square Hotel
Front of property - evening/night
Golden Gate Hotel
3.0 star property
8.8 out of 10, Excellent, (250)
"This is a very cute, quaint, historic facility with a lot of charm and great staff. It has its compromises—the floors squeak, the room had a window but no AC, and I am sure I missed a disclosure but it turns out I booked a room with a shared toilet and shower down the hall. For the price, it was great, and for the age and design of the building, the owners have done a great job keeping it up. Everything was clean and well-cared-for in its old world way. "
The price is ₩115,690
per night
May 21 - May 22
Golden Gate Hotel
Skyline Studio, 2 Double Beds | City view
Stanford Court San Francisco
4.0 star property
9.0 out of 10, Wonderful, (1000)
"Great hotel overall"
The price is ₩195,804
per night
May 28 - May 29
Stanford Court San Francisco
Lobby sitting area
The Marker San Francisco
4.0 star property
8.4 out of 10, Very Good, (1000)
"Great hotel property. Truly a hidden gem. "
The price is ₩152,292
per night
Jun 14 - Jun 15
The Marker San Francisco
Banquet hall
Omni San Francisco Hotel
4.5 star property
9.4 out of 10, Exceptional, (1001)
"Staff was fantastic. The area was kind of deserted on the weekends but we enjoyed it overall."
The price is ₩257,389
per night
Jun 1 - Jun 2
Omni San Francisco Hotel
Exterior
The Westin San Francisco Airport
4.0 star property
8.8 out of 10, Excellent, (1975)
"Parking is $48 a day is only part i dont like about this hotel!!!"
The price is ₩167,444
per night
May 19 - May 20
The Westin San Francisco Airport
Front of property
The Herbert Hotel
2.5 star property
7.2 out of 10, Good, (1000)
"I had to check in at Stafford Hotel which was a bit inconvenient. Room was good size and right on cable car line. Morton’s is two blocks away & Union Square is close as well."
The price is ₩60,534
per night
May 21 - May 22
The Herbert Hotel
Don't see what you're looking for?
See all available properties in Mission Bay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

What is Mission Bay like?

Travelers will be sure to enjoy their time in San Francisco's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Chase Center while you're in the neighborhood.

Where is the best place to stay in Mission Bay?

Based on Expedia customer reviews, LUMA Hotel San Francisco is the highest ranked property in Mission Bay. This hotel is a short 5-minute walk from Oracle Park, and it offers a restaurant and a fitness center.

How many hotels are there in Mission Bay?

When you want to kick up your feet after a day of exploring the sights in San Francisco, you can choose from 14 Expedia hotels and other accommodations in Mission Bay.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes! The majority of hotel room reservations are fully refundable if you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, you may still be able to cancel and receive a refund within a 24-hour period of booking. Put your dates in and click on "Search", then filter by "fully refundable" to get the best deals in Mission Bay.

Where can I learn more about changing or cancelling my trip to Mission Bay?

To access more information about changing or cancelling your trip to Mission Bay, head over to our customer service page.

What are the top things to see and do in Mission Bay?

Chase Center, Mission Creek Park, and Lefty O'Doul Bridge are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.

How can I get around Mission Bay and the greater San Francisco area?

For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station, or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.