Top 10 Hotels in Southeast Minnesota, MN from ₩100,088 - Competitive Prices

A mural of Red Wing with a steamship, houses, and a bridge.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Southeast Minnesota

Pet friendly

Pool

Apartment

Hot tub

Spa

Condo

Family friendly

Cottage

Waterpark

Check prices for these dates

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Southeast Minnesota hotels

An indoor swimming pool with a curved design, surrounded by palm trees and a white pool ladder.

A hotel room with a large bed, a desk, a chair, and a view of the outdoors through the window.

A modern interior with a fireplace, a green armchair, and a patterned rug.

A modern hotel with a prominent neon sign, multiple floors, and a well-maintained lawn area.

1. Treasure Island Resort & Casino

Welch

James

₩105,015

₩132,299 total

includes taxes & fees

Sep 7 - Sep 8

A modern building with a covered porch, brick facade, and a large evergreen tree in the background.

2. Hotel Owatonna

Owatonna

Carla

A hotel room with a large bed, a desk with a chair, a window with a view of the outdoors, and two bedside lamps.

A gym with treadmills, elliptical machines, and a stationary bike.

3. Comfort Inn & Suites Rochester South Mayo Clinic

Rochester

₩114,181

₩131,451 total

includes taxes & fees

Sep 30 - Oct 1

A modern dining area with high tables, chairs, and pendant lighting.

A reception desk with a large digital screen displaying a cityscape and the word "happy."

A multi-story hotel with a modern design, featuring a prominent entrance with a covered area and a parking lot in front.

A hotel room with two beds, a desk with a computer, a chair, and a window with a view.

4. Hampton Inn & Suites Rochester-North

Rochester

Albert

₩134,303

₩154,617 total

includes taxes & fees

Sep 5 - Sep 6

A swimming pool with clear blue water, surrounded by lounge chairs and a view of residential buildings through large windows.

A modern reception area with a brick-patterned wall, two reception desks, a flat-screen TV, and seating arrangements including a sofa and chairs.

A modern hotel with a flat roof, multiple windows, and a covered outdoor seating area.

A modern lounge area with seating, a fireplace, and a bar area.

5. Residence Inn by Marriott Rochester Mayo Clinic Area South

Rochester

Richard

₩188,559

₩217,079 total

includes taxes & fees

Sep 26 - Sep 27

A hotel entrance with a stone facade, a glass door, and a metal roof structure.

A spa area with a hot tub, exercise equipment, and a seating area with chairs and a table.

An outdoor patio area with brick walls, a large arched window, and outdoor seating.

A hotel lobby with striped armchairs, a sofa, a fireplace, and a clock on the wall.

6. Aspen Suites

Rochester

Dr. suzette

₩174,313

₩210,717 total

includes taxes & fees

Sep 3 - Sep 4

A hotel with a stone facade, multiple windows, and a covered entrance.

A hotel room with a large window, a sofa, two beds, and a desk.

A modern living room with a stone wall, comfortable seating, a flat-screen TV, and decorative vases.

A modern living room with a stone wall, a leather sofa, a glass coffee table, and a fireplace.

7. Cobblestone Hotel & Suites - Austin

Austin

Regimantas

₩147,406

₩163,436 total

includes taxes & fees

Sep 3 - Sep 4

An indoor swimming pool with clear water, wooden flooring, and a ceiling with wooden beams and lights.

A room with a TV mounted on the wall, a wooden table, and two patterned armchairs.

A gym with treadmills, an elliptical, and a water station.

A café with multiple tables and chairs, a kitchen area with appliances, and a clock on the wall.

8. Med City Inn & Suites - Mayo Clinic Area

Kutzky Park

Hailey

₩104,051

₩119,796 total

includes taxes & fees

Aug 31 - Sep 1

An outdoor patio area with yellow umbrellas, wicker furniture, and a sign for Centerstone Plaza Hotel.

A modern reception area with a wooden reception desk, glass pendant lights, and a long hallway with seating.

A restaurant interior with wooden tables, chairs, and a stone wall.

A modern living room with a dark wall, a decorative light fixture, and a patterned wall art piece.

9. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

Historic Southwest

Sarah

₩157,178

₩180,947 total

includes taxes & fees

Sep 6 - Sep 7

A self-service breakfast station with a waffle maker, coffee machines, and a variety of condiments.

A hotel lobby with leather sofas, a stone fireplace, and a patterned carpet.

A reception area with a wooden reception desk, a red doormat, and framed awards on the wall.

A hotel room with a large bed, a desk, a chair, a television, and a window with curtains.

10. Econo Lodge Mayo Clinic Area

Rochester

Markus

₩94,348

₩108,619 total

includes taxes & fees

Sep 20 - Sep 21

A room with a fireplace, two leather armchairs, a sofa, and a large window providing a view of the outdoors.

A hotel room with a bed, a sink, a microwave, and a window with curtains.

A long, narrow hotel corridor with a carpeted floor, light fixtures along the walls, and a ceiling with recessed lighting.

A paved garden area with two benches, a potted plant with yellow flowers, and a variety of greenery.

11. Brentwood Inn & Suites

Downtown Rochester

Bryan

₩172,043

₩198,070 total

includes taxes & fees

Sep 3 - Sep 4

A modern outdoor seating area with a built-in fireplace, two wooden chairs, a table, and a sofa.

A hotel room with a kitchenette, a bed, a sofa, a small table, and a window with curtains.

A modern interior with a dining area, a kitchen, and a pantry stocked with snacks.

A modern kitchen with a central island, bar stools, and pendant lighting. A living area with a sofa, ottoman, and a view of the outdoors is visible.

12. Staybridge Suites Rochester - Mayo Clinic Area by IHG

Kutzky Park

matthew

₩141,763

₩165,956 total

includes taxes & fees

Sep 5 - Sep 6

A modern hotel lobby with a reception desk, seating area, and a kitchenette.

A hotel room with a large bed, a desk, a chair, and a kitchenette.

A hotel with a covered entrance, multiple floors, and a parking lot.

A modern hotel lobby with a reception desk, seating area, and a large window providing natural light.

13. Spark by Hilton Rochester South

Rochester

Helena

₩106,088

₩122,135 total

includes taxes & fees

Sep 5 - Sep 6

A reception area with a wooden reception desk, a "Welcome to the Bread & Butter State" sign, and a "Please Center" sign.

A pool area with a table and chairs, a lifeguard chair, and a pool lift.

A modern lounge area with seating arrangements, a reception desk, and a patterned wall.

A coffee station with four coffee dispensers, a stack of disposable cups, and a tray with various coffee-related items.

14. Hampton Inn Rochester-South

Rochester

Lynne

₩139,946

₩161,112 total

includes taxes & fees

Sep 7 - Sep 8

An outdoor patio with a brick floor, stone fireplace, and wooden pergola.

An indoor swimming pool with clear pool rules posted on the wall, a lifeguard chair, and a pool lift sign.

A modern hotel lobby with a stone wall fireplace, comfortable seating, and a chandelier.

A conference room with multiple tables and chairs, ceiling fans, and artwork on the walls.

15. Homewood Suites by Hilton Rochester Mayo Clinic Area / Saint Marys

Kutzky Park

Lin

₩156,875

₩180,602 total

includes taxes & fees

Sep 5 - Sep 6

A modern hotel lobby with multiple seating areas, including a central dining table with chairs, a bar area, and a seating section with cushioned chairs.

A modern hotel room with a large bed, two bedside tables, and built-in lighting.

A hotel reception desk with a modern design, a clock, and a digital screen.

A modern conference room with a long table, multiple chairs, and a wooden partition.

16. SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

Kutzky Park

Patti

₩147,406

₩169,700 total

includes taxes & fees

Sep 5 - Sep 6

A Holiday Inn Express building with a covered entrance, outdoor seating area, and a well-lit facade.

A coffee station with two espresso machines and a variety of coffee pods and cups.

A swimming pool with a lifeguard sign, tiled walls, and a clear blue pool.

A hotel reception area with a reception desk, a waiting area with a sofa, and a clear view of the lobby.

17. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG

Kutzky Park

Janet

₩148,645

₩171,127 total

includes taxes & fees

Sep 4 - Sep 5

A modern lounge area with leather seating, a fireplace, and a patterned carpet.

A modern hotel room with a fireplace, a sofa, a desk with a computer, and a patterned carpet.

18. GrandStay Cannon Falls

Cannon Falls

Heather

₩177,548

₩190,651 total

includes taxes & fees

Aug 31 - Sep 1

An outdoor patio area with a fire pit, seating, and a pergola.

A Country Inn & Suites building with a covered entrance, multiple windows, and a flagpole.

An indoor swimming pool with wooden walls and tiled flooring, surrounded by seating areas and doors.

A modern lobby with a wooden reception desk, a staircase, and a seating area with two chairs.

19. Country Inn & Suites by Radisson, Albert Lea - Austin

Albert Lea

Gary

₩120,788

₩133,923 total

includes taxes & fees

Sep 20 - Sep 21

A poolside area with wicker chairs and potted plants, a tiled floor, and a clear view of the pool.

A modern building with large windows and a parking lot.

A hotel room with a sofa, two beds, a large window, and a framed artwork on the wall.

A reception area with a wooden reception desk, a clock, and a wall-mounted display.

20. Kahler Inn and Suites - Mayo Clinic Area

Downtown Rochester

Valarie

₩172,180

₩198,222 total

includes taxes & fees

Sep 4 - Sep 5

View all properties

Vacation Rentals in Southeast Minnesota

Aparthotel

A spacious living area with a modern staircase, leather sofas, and contemporary lighting.

A modern pool table in a spacious, well-lit room with large windows and a bar area.

A rooftop pool area with lounge chairs and umbrellas, surrounded by a modern building with a brick facade.

An outdoor seating area with blue sofas and wicker chairs, a wooden table, and green ottomans on a tiled patio.

The Berkman

Folwell

"The Berkman is where we stay when we are in Rochester. Good location near St Mary's Hospital and easy shuttles to Mayo. Great food near by and wonderful amenities at the hotel. Beds are comfortable and there is a washer and dryer in each room."

Apartment

A bedroom with a large bed, a TV on a dresser, and a view of the city through large windows.

A modern kitchen with wooden cabinets, a granite countertop, and a stainless steel stove.

A multi-story building with the sign 'Broadway Plaza' indicating a commercial or hotel property.

Broadway Plaza, Trademark Collection by Wyndham

Downtown Rochester

"We have stayed at Broadway Plaza multiple times. It is our go-to property. It is quiet, clean and provides easy access to the Mayo Clinic and downtown restaurants and services. The staff is always courteous and efficient offering any services or items we may need. Our stays here have always been enjoyable."

Apartment

A wooden interior with a kitchen, bar area, and a staircase.

A two-story building with a storefront featuring a sign for coffee, ice cream, and craft drinks. There are steps leading to the entrance, a bench outside, and potted plants.

A wooden cabin interior with a bed, a ceiling light, and a window.

A modern kitchen with stainless steel appliances, wooden cabinets, and a stone tile floor.

Steps to Marina & Beach: Couples Cottage in Pepin

Pepin

"Great location and very well furnished with new appliances."

Apartment

A two-story building with a green exterior, a covered porch, and a driveway leading to a garage.

A cozy room with a sofa bed, a small side table, and a window with blinds.

A modern kitchen with stainless steel appliances, wooden cabinets, and a dishwasher.

A room with a large window, a flat-screen TV mounted on the wall, a fluffy chair, a small round table, and a chair with a basket.

< 1/2 Mi to Downtown: Quiet Northfield Apartment

Northfield

"It was amazing!"

Cottage

A wooden building with a covered entrance, a white door, and a flower planter with various flowers.

A kitchen with wooden cabinets, a stainless steel sink, and a dining area with a table set for four.

A kitchen with wooden cabinets, a microwave, an oven, and a window overlooking a patio area.

La Crescent Cottage on Minnesota Bluffs w/ View!

Dakota

"Best home rental ever! "

See all vacation rentals

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Southeast Minnesota attractions

A cave with a reflective pool and illuminated walls.

Forestville Mystery Cave State Park

9.0/10 (22 reviews)

Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.

See properties

A waterfall cascading over a rocky cliff.

Niagara Cave

9.2/10 (23 reviews)

Commune with nature and explore the great outdoors at Niagara Cave during your travels in Harmony. Amble within the natural setting or visit the churches in this family-friendly area.

See properties

Mayo Civic Center

9.2/10 (818 reviews)

Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.

See properties

Apache Mall

8.6/10 (1,101 reviews)

During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

See properties

Rochester Recreation Center

8.0/10 (205 reviews)

Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

See properties

Olmsted County Fairgrounds

7.8/10 (177 reviews)

Take the family on an outing to Olmsted County Fairgrounds during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

See properties

Shattuck-St. Mary's School

9.6/10 (69 reviews)

Enjoy the collegiate vibe when you visit Shattuck-St. Mary's School, during your trip to Faribault. Visit the shops in this family-friendly area, or simply enjoy its coffeehouses.

See properties

Regional Sports Center

8.0/10 (63 reviews)

Catch an event at Regional Sports Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.

See properties

Learn more about Southeast Minnesota

Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.

See all hotels in Southeast Minnesota

A lake surrounded by dense forest and a distant hill with a fort.

Top Southeast Minnesota Hotel Reviews

AmericInn by Wyndham Rochester Near Mayo Clinic

10/10 Excellent

"Nice room, decently nice hotel, breakfast was "meh" but typical, nice having a bar attached. For those with an EV, no charging stations but they do have plugs for engine block heaters where you can plug in a charger, if you carry a portable charger like I do."

Nichols Inn of Red Wing

10/10 Excellent

"This was a comfortable hotel at a decent price. Clean room and nice breakfast included. Only complaint was the fridge (I think) seemed to make a repetitive humming noise that sounded like someone was periodically drilling into the wall. Otherwise we had an easy two night stay."

Hyatt House Rochester/Mayo Clinic Area

8/10 Good

"Easy place to get to; helpful staff. We had a large room. The hotel was quiet. Hot tub out of order and our room was ovwrlooking the train track which, unfortunately, had a train come through in the middle of the night and woke us all up. It had a nice terrace on our floor for relaxing."

Kahler Grand Hotel

8/10 Good

"The room was clean, but dated the bathroom was clean but old ,water leaked out of the shower to the floor Nothing you can do about ,it faucets very old didn't work real well. Not enough staff at front desk. Other than that price right and central in the subway system to go to the Mayo Clinic. I travel to mayo every three months. I would probably stay again."

Treasure Island Resort & Casino

8/10 Good

"Very enjoyable experience"

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

10/10 Excellent

"This hotel is a great choice if you're needing to stay for the Mayo. It's close but not too close, making it overly expensive. Staff was beyond amazing, from the front desk to the shuttle driver. Decent continental breakfast and the attached restaurant was delightful. I walked the neighborhood daily and what a beautiful location."

Aspen Select

10/10 Excellent

"Easy check in and check out. Close to the hospital and restaurants. Rooms were clean and comfortable. We stayed on the 4th floor and it was very nice. They have a great shuttle too."

SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

8/10 Good

"Check out was very confusing. It took about a half hour and I am still not sure if the billing was correct. Food was fine."

Kahler Inn and Suites - Mayo Clinic Area

10/10 Excellent

"The hotel was nice and clean, staff were very pleasant, breakfast was a big tasty buffet. The only complaint was the parking garage was very little and barely fit my mid size SUV because of how low the ceiling was, but there is another garage next to the hotel that was actually cheaper. Also, being on the side where all the construction was going on, but I get it they had to start super early because of the heat. Most importantly though it was with walking distance from all of my Mayo appts and several restaurants."

More cheap stays in Southeast Minnesota

Super 8 by Wyndham Winona MN

1025 Sugar Loaf Rd Winona MN

₩88,086

₩100,088 total

Sep 20 - Sep 21

includes taxes & fees

Days Inn by Wyndham Austin

700 16th Ave Nw Austin MN

₩105,290

₩116,741 total

Sep 22 - Sep 23

includes taxes & fees

Med City Inn & Suites - Mayo Clinic Area

435 16th Ave Nw Rochester MN

₩104,051

₩119,796 total

Aug 31 - Sep 1

includes taxes & fees

8/10 Very Good! (1,007 reviews)

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

1517 16th St Sw Rochester MN

₩135,982

₩156,549 total

Sep 20 - Sep 21

includes taxes & fees

Hampton Inn Rochester-South

1755 S Broadway Rochester MN

₩139,946

₩161,112 total

Sep 7 - Sep 8

includes taxes & fees

Brentwood Inn & Suites

123 Fourth Ave. NW Rochester MN

₩172,043

₩198,070 total

Sep 3 - Sep 4

includes taxes & fees

8.8/10 Excellent! (1,003 reviews)

Hotels in Southeast Minnesota with star-rating

Explore a world of travel with Expedia

More ways to book

Book Hotels in Southeast Minnesota on Expedia.com

Find hotels in Southeast Minnesota, MN from ₩100,088

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Southeast Minnesota

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Southeast Minnesota hotels

1. Treasure Island Resort & Casino

2. Hotel Owatonna

3. Comfort Inn & Suites Rochester South Mayo Clinic

4. Hampton Inn & Suites Rochester-North

5. Residence Inn by Marriott Rochester Mayo Clinic Area South

6. Aspen Suites

7. Cobblestone Hotel & Suites - Austin

8. Med City Inn & Suites - Mayo Clinic Area

9. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

10. Econo Lodge Mayo Clinic Area

11. Brentwood Inn & Suites

12. Staybridge Suites Rochester - Mayo Clinic Area by IHG

13. Spark by Hilton Rochester South

14. Hampton Inn Rochester-South

15. Homewood Suites by Hilton Rochester Mayo Clinic Area / Saint Marys

16. SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

17. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG

18. GrandStay Cannon Falls

19. Country Inn & Suites by Radisson, Albert Lea - Austin

20. Kahler Inn and Suites - Mayo Clinic Area

Vacation Rentals in Southeast Minnesota

The Berkman

Broadway Plaza, Trademark Collection by Wyndham

Steps to Marina & Beach: Couples Cottage in Pepin

< 1/2 Mi to Downtown: Quiet Northfield Apartment

La Crescent Cottage on Minnesota Bluffs w/ View!

Stay near popular Southeast Minnesota attractions

Forestville Mystery Cave State Park

Niagara Cave

Mayo Civic Center

Apache Mall

Rochester Recreation Center

Olmsted County Fairgrounds

Shattuck-St. Mary's School

Regional Sports Center

Learn more about Southeast Minnesota

Top Southeast Minnesota Hotel Reviews

AmericInn by Wyndham Rochester Near Mayo Clinic

Nichols Inn of Red Wing

Hyatt House Rochester/Mayo Clinic Area

Kahler Grand Hotel

Treasure Island Resort & Casino

Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area

Aspen Select

SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys

Kahler Inn and Suites - Mayo Clinic Area

More cheap stays in Southeast Minnesota

Super 8 by Wyndham Winona MN

Days Inn by Wyndham Austin

Med City Inn & Suites - Mayo Clinic Area

Best Western Rochester Hotel Mayo Clinic Area/St. Mary's

Hampton Inn Rochester-South

Brentwood Inn & Suites

Hotels in Southeast Minnesota with star-rating

Explore a world of travel with Expedia

Go further with the Expedia app