Find hotels in Southeast Minnesota, MN from ₩100,088
Change your mindBook hotels with free cancellation
Be pickySearch almost a million properties worldwide
Go beyond your typical stay in Southeast Minnesota
Pet friendly
Apartment
Condo
Family friendly
Cottage
Waterpark
Check prices for these dates
Tonight
Aug 30 - Aug 31Tomorrow
Aug 31 - Sep 1Next weekend
Sep 4 - Sep 6In two weeks
Sep 11 - Sep 13Our top choices for Southeast Minnesota hotels
1. Treasure Island Resort & Casino
Treasure Island Resort & CasinoWelch
James
₩105,015
₩132,299 total
includes taxes & fees
Sep 7 - Sep 8
2. Hotel Owatonna
Hotel OwatonnaOwatonna
Carla
₩110,107
₩121,531 total
includes taxes & fees
Aug 31 - Sep 1
3. Comfort Inn & Suites Rochester South Mayo Clinic
Comfort Inn & Suites Rochester South Mayo ClinicRochester
Deborah
₩114,181
₩131,451 total
includes taxes & fees
Sep 30 - Oct 1
4. Hampton Inn & Suites Rochester-North
Hampton Inn & Suites Rochester-NorthRochester
Albert
₩134,303
₩154,617 total
includes taxes & fees
Sep 5 - Sep 6
5. Residence Inn by Marriott Rochester Mayo Clinic Area South
Residence Inn by Marriott Rochester Mayo Clinic Area SouthRochester
Richard
₩188,559
₩217,079 total
includes taxes & fees
Sep 11 - Sep 12
6. Aspen Suites
Aspen SuitesRochester
Dr. suzette
₩174,313
₩210,717 total
includes taxes & fees
Sep 3 - Sep 4
7. Cobblestone Hotel & Suites - Austin
Cobblestone Hotel & Suites - AustinAustin
Regimantas
₩147,406
₩163,436 total
includes taxes & fees
Sep 3 - Sep 4
8. Med City Inn & Suites - Mayo Clinic Area
Med City Inn & Suites - Mayo Clinic AreaKutzky Park
Hailey
₩104,051
₩119,796 total
includes taxes & fees
Aug 31 - Sep 1
9. Centerstone Plaza Hotel Soldiers Field - Mayo Clinic Area
Centerstone Plaza Hotel Soldiers Field - Mayo Clinic AreaHistoric Southwest
Sarah
₩157,178
₩180,947 total
includes taxes & fees
Sep 6 - Sep 7
10. Econo Lodge Mayo Clinic Area
Econo Lodge Mayo Clinic AreaRochester
Markus
₩94,348
₩108,619 total
includes taxes & fees
Sep 20 - Sep 21
11. Brentwood Inn & Suites
Brentwood Inn & SuitesDowntown Rochester
Bryan
₩172,043
₩198,070 total
includes taxes & fees
Sep 3 - Sep 4
12. Staybridge Suites Rochester - Mayo Clinic Area by IHG
Staybridge Suites Rochester - Mayo Clinic Area by IHGKutzky Park
matthew
₩141,763
₩165,956 total
includes taxes & fees
Sep 5 - Sep 6
13. Spark by Hilton Rochester South
Spark by Hilton Rochester SouthRochester
Helena
₩106,088
₩122,135 total
includes taxes & fees
Sep 5 - Sep 6
14. Hampton Inn Rochester-South
Hampton Inn Rochester-SouthRochester
Lynne
₩139,946
₩161,112 total
includes taxes & fees
Sep 7 - Sep 8
15. Homewood Suites by Hilton Rochester Mayo Clinic Area / Saint Marys
Homewood Suites by Hilton Rochester Mayo Clinic Area / Saint MarysKutzky Park
Lin
₩156,875
₩180,602 total
includes taxes & fees
Sep 5 - Sep 6
16. SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys
SpringHill Suites by Marriott Rochester-Mayo Clinic/St MarysKutzky Park
Tricia
₩147,406
₩169,700 total
includes taxes & fees
Sep 5 - Sep 6
17. Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHG
Holiday Inn Express & Suites Rochester – Mayo Clinic Area by IHGKutzky Park
Janet
₩148,645
₩171,127 total
includes taxes & fees
Sep 4 - Sep 5
18. GrandStay Cannon Falls
GrandStay Cannon FallsCannon Falls
Heather
₩177,548
₩190,651 total
includes taxes & fees
Aug 31 - Sep 1
19. Country Inn & Suites by Radisson, Albert Lea - Austin
Country Inn & Suites by Radisson, Albert Lea - AustinAlbert Lea
Gary
₩122,109
₩135,389 total
includes taxes & fees
Sep 20 - Sep 21
20. Kahler Inn and Suites - Mayo Clinic Area
Kahler Inn and Suites - Mayo Clinic AreaDowntown Rochester
Valarie
₩172,180
₩198,222 total
includes taxes & fees
Sep 4 - Sep 5
Vacation Rentals in Southeast Minnesota
Aparthotel
The Berkman
The BerkmanFolwell
"This was a very nice hotel located in downtown. It’s directly across from Mayo. The concierge checked each guest in and very helpful. This nice touch made the experience extra special."
Apartment
Broadway Plaza, Trademark Collection by Wyndham
Broadway Plaza, Trademark Collection by WyndhamDowntown Rochester
"We have stayed at Broadway Plaza multiple times. It is our go-to property. It is quiet, clean and provides easy access to the Mayo Clinic and downtown restaurants and services. The staff is always courteous and efficient offering any services or items we may need. Our stays here have always been enjoyable."
Apartment
Steps to Marina & Beach: Couples Cottage in Pepin
Steps to Marina & Beach: Couples Cottage in PepinPepin
"Great location and very well furnished with new appliances."
Apartment
< 1/2 Mi to Downtown: Quiet Northfield Apartment
< 1/2 Mi to Downtown: Quiet Northfield ApartmentNorthfield
"It was amazing!"
Cottage
La Crescent Cottage on Minnesota Bluffs w/ View!
La Crescent Cottage on Minnesota Bluffs w/ View!Dakota
"Best home rental ever! "
Save an average of 15% on thousands of hotels when you're signed in
Stay near popular Southeast Minnesota attractions
Photo by T. Jen
Forestville Mystery Cave State Park
9.0/10 (22 reviews)
Commune with nature and explore the great outdoors at Forestville Mystery Cave State Park during your travels in Preston. Wander the parks or discover the area's countryside.
Photo by Linda Strub
Niagara Cave
9.2/10 (23 reviews)
Commune with nature and explore the great outdoors at Niagara Cave during your travels in Harmony. Amble within the natural setting or visit the churches in this family-friendly area.
Mayo Civic Center
9.2/10 (818 reviews)
Catch an event at Mayo Civic Center during your trip to Rochester. Attend a sporting event or simply visit the area's shops.
Apache Mall
8.6/10 (1,101 reviews)
During your visit to Rochester, you can do some window-shopping at Apache Mall. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Rochester Recreation Center
8.0/10 (205 reviews)
Catch an event at Rochester Recreation Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Olmsted County Fairgrounds
7.8/10 (177 reviews)
Take the family on an outing to Olmsted County Fairgrounds during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Shattuck-St. Mary's School
9.6/10 (69 reviews)
Enjoy the collegiate vibe when you visit Shattuck-St. Mary's School, during your trip to Faribault. Visit the shops in this family-friendly area, or simply enjoy its coffeehouses.
Regional Sports Center
8.0/10 (63 reviews)
Catch an event at Regional Sports Center during your trip to Rochester. Attend a sporting event or simply enjoy the top-notch restaurants while you're in the area.
Learn more about Southeast Minnesota
Explore the family-friendly area of Southeast Minnesota—restaurants, sports teams, and sights from Mayowood Mansion to Apache Mall.
See all hotels in Southeast Minnesota
Top Southeast Minnesota Hotel Reviews
Aspen Select
10/10 Excellent
"Construction in the area is crazy, but if you are looking for a good price near the Mayo Clinic then this is your hotel. The sister property was almost 3x the price. Still has good access during Mayo construction. Directly across from Saint Mary’s"
Kahler Grand Hotel
8/10 Good
"Toilets were too low for seniors….put higher toilets in. It is ridicules to have to sit almost of the floor, especially in room 562!!! Otherwise every thing was wonderful!!"
Hyatt House Rochester/Mayo Clinic Area
10/10 Excellent
"This property has a good location and since it’s newer, that’s an added bonus. They have a complimentary, elevated breakfast which is great."
SpringHill Suites by Marriott Rochester-Mayo Clinic/St Marys
8/10 Good
"Check out was very confusing. It took about a half hour and I am still not sure if the billing was correct. Food was fine."
Kahler Inn and Suites - Mayo Clinic Area
10/10 Excellent
"The hotel was nice and clean, staff were very pleasant, breakfast was a big tasty buffet. The only complaint was the parking garage was very little and barely fit my mid size SUV because of how low the ceiling was, but there is another garage next to the hotel that was actually cheaper. Also, being on the side where all the construction was going on, but I get it they had to start super early because of the heat. Most importantly though it was with walking distance from all of my Mayo appts and several restaurants."
Hotel Indigo Rochester – Mayo Clinic Area by IHG
10/10 Excellent
"This is my first time staying at Hotel Indigo. The staff was amazing. I had to keep adding nights and they were so accommodating. The room was just right. It was clean , well stocked and easy access to the Mayo Clinic. I really liked the front desk people. Super friendly and helpful. Love the attached restaurant!"
More cheap stays in Southeast Minnesota
Super 8 by Wyndham Winona MN
1025 Sugar Loaf Rd Winona MN
₩88,086
₩100,088 total
Sep 20 - Sep 21
includes taxes & fees
Days Inn by Wyndham Austin
700 16th Ave Nw Austin MN
₩105,290
₩116,741 total
Sep 22 - Sep 23
includes taxes & fees
Med City Inn & Suites - Mayo Clinic Area
435 16th Ave Nw Rochester MN
₩104,051
₩119,796 total
Aug 31 - Sep 1
includes taxes & fees
8/10 Very Good! (1,007 reviews)
Best Western Rochester Hotel Mayo Clinic Area/St. Mary's
1517 16th St Sw Rochester MN
₩135,982
₩156,549 total
Sep 20 - Sep 21
includes taxes & fees
Hampton Inn Rochester-South
1755 S Broadway Rochester MN
₩139,946
₩161,112 total
Sep 7 - Sep 8
includes taxes & fees
Brentwood Inn & Suites
123 Fourth Ave. NW Rochester MN
₩172,043
₩198,070 total
Sep 3 - Sep 4
includes taxes & fees
8.8/10 Excellent! (1,002 reviews)
Hotels in Southeast Minnesota with star-rating
4 Star Hotels
8 properties
3 Star Hotels
114 properties
2 Star Hotels
86 properties
