Find hotels in Mission Bay, San Francisco

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2,482 reviews)
"Very nice and clean hotel!"
United States
Ulises
The price is ₩333,332
₩392,313 total
includes taxes & fees
May 29 - May 30
LUMA Hotel San Francisco

The Evergreen

The Evergreen
2.0 star property
20.3 km from Mission Bay
9.2 out of 10, Wonderful, (530 reviews)
"Nice property. "
United States
Chris
The price is ₩189,055
₩211,742 total
includes taxes & fees
May 10 - May 11
The Evergreen

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7,469 reviews)
"Great family stay! "
United States
Brian
The price is ₩211,078
₩308,400 total
includes taxes & fees
May 25 - May 26
Hotel Riu Plaza Fisherman's Wharf

Marin Lodge

Marin Lodge
2.0 star property
26.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,003 reviews)
"Great location and fantastic staff. Room was great. Would stay there again. "
United States
Shannon
The price is ₩158,660
₩177,699 total
includes taxes & fees
May 10 - May 11
Marin Lodge

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
20.5 km from Mission Bay
8.6 out of 10, Excellent, (2,988 reviews)
"Very nice stay"
United States
Johnathon
The price is ₩165,792
₩188,497 total
includes taxes & fees
May 10 - May 11
Hilton San Francisco Airport Bayfront

Marina Village Inn

Marina Village Inn
2.0 star property
11.2 km from Mission Bay
7.4 out of 10, Good, (1,004 reviews)
"Love this spot. Third time staying here. Parking is convenient, staff is friendly & accommodating, rooms are simple cozy & do just the trick for a well rested night! Very much recommend staying here, and the view is so charming! Truly a hidden gem to stay!!!"
United States
Karly N
The price is ₩107,566
₩122,625 total
includes taxes & fees
May 11 - May 12
Marina Village Inn

Grand Bay Hotel San Francisco

Grand Bay Hotel San Francisco
4.0 star property
29.8 km from Mission Bay
8.4 out of 10, Very Good, (1,002 reviews)
"Clean room excellent staff really enjoyed my stay"
United States
Ana Patricia Rivera
The price is ₩150,218
₩236,986 total
includes taxes & fees
May 29 - May 30
Grand Bay Hotel San Francisco

The Dylan at SFO

The Dylan at SFO
3.0 star property
19.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,870 reviews)
"Great staff and very clean rooms "
United States
Laura
The price is ₩164,732
₩195,912 total
includes taxes & fees
May 9 - May 10
The Dylan at SFO

The Marina Inn on San Francisco Bay

The Marina Inn on San Francisco Bay
3.5 star property
19.6 km from Mission Bay
8.6 out of 10, Excellent, (2,434 reviews)
"Overall stay was good "
United States
Ganesh
The price is ₩138,959
₩158,415 total
includes taxes & fees
May 9 - May 10
The Marina Inn on San Francisco Bay

Aloft San Francisco Airport

Aloft San Francisco Airport
3.0 star property
18.7 km from Mission Bay
9.0 out of 10, Wonderful, (2,264 reviews)
"Clean, modern, close to airport, nice rooms."
Canada
Katherine
The price is ₩209,606
₩240,933 total
includes taxes & fees
May 23 - May 24
Aloft San Francisco Airport

Hyatt Place San Francisco Downtown

Hyatt Place San Francisco Downtown
3.0 star property
0.9 km from Mission Bay
9.4 out of 10, Exceptional, (2,153 reviews)
"Clean great location great breakfast Beds comfy"
United States
Zorintha Ann
The price is ₩289,664
₩340,921 total
includes taxes & fees
May 29 - May 30
Hyatt Place San Francisco Downtown

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
12.8 km from Mission Bay
8.2 out of 10, Very Good, (4,576 reviews)
"Great price for a clean comfortable stay in Berkeley"
United States
Mary
The price is ₩198,864
₩229,081 total
includes taxes & fees
May 24 - May 25
DoubleTree by Hilton Hotel Berkeley Marina

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.0 out of 10, Wonderful, (3,819 reviews)
"Great comfortable stay and friendly/helpful staff."
United States
Liliana
The price is ₩208,442
₩315,560 total
includes taxes & fees
May 25 - May 26
Hotel Caza Fisherman's Wharf

Hyatt Regency San Francisco Airport

Hyatt Regency San Francisco Airport
4.0 star property
19.8 km from Mission Bay
9.0 out of 10, Wonderful, (1,358 reviews)
"Great location right off the freeway."
United States
Michelle
The price is ₩196,724
₩264,422 total
includes taxes & fees
May 30 - May 31
Hyatt Regency San Francisco Airport

Holiday Inn Express Hotel & Suites Oakland-Airport by IHG

Holiday Inn Express Hotel & Suites Oakland-Airport by IHG
2.5 star property
17.7 km from Mission Bay
8.8 out of 10, Excellent, (1,005 reviews)
"The friendliness of the staff and the ease of the airport shuttle were two highlights for me. The breakfast provided good too!"
United States
Mary
The price is ₩171,164
₩215,717 total
includes taxes & fees
May 30 - May 31
Holiday Inn Express Hotel & Suites Oakland-Airport by IHG

Cow Hollow Inn & Suites

Cow Hollow Inn & Suites
3.5 star property
Marina District, 5.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,617 reviews)
"Had a lovely stay with family here."
United Kingdom
Karen
The price is ₩183,945
₩213,951 total
includes taxes & fees
May 31 - Jun 1
Cow Hollow Inn & Suites

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (2,553 reviews)
"We had a great stay with clean rooms and friendly staff"
United States
Kara
The price is ₩196,724
₩291,490 total
includes taxes & fees
Jun 8 - Jun 9
Hotel Zephyr San Francisco

Hotel Aura SFO

Hotel Aura SFO
3.0 star property
17.1 km from Mission Bay
9.0 out of 10, Wonderful, (2,633 reviews)
"Breakfast was fresh and the staff is great also they have parking for the guest "
United States
Nathaniel
The price is ₩150,655
₩180,155 total
includes taxes & fees
May 10 - May 11
Hotel Aura SFO

Inn at Rockaway San Francisco Pacifica

Inn at Rockaway San Francisco Pacifica
2.5 star property
20.2 km from Mission Bay
8.2 out of 10, Very Good, (1,021 reviews)
"Staff was wonderful, beautiful location. "
United States
Cathy
The price is ₩164,117
₩191,105 total
includes taxes & fees
May 12 - May 13
Inn at Rockaway San Francisco Pacifica

Crowne Plaza San Francisco Airport by IHG

Crowne Plaza San Francisco Airport by IHG
3.5 star property
20.3 km from Mission Bay
7.8 out of 10, Good, (2,721 reviews)
"Friendly staff, airport shuttle service a big plus."
United States
MARISSA
The price is ₩165,938
₩188,660 total
includes taxes & fees
May 10 - May 11
Crowne Plaza San Francisco Airport by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most. Learn more about Mission Bay
Learn more about Mission Bay

Union Square

Major tourist destination in downtown San Francisco, Union Square boasts shopping, hotels, and theaters. Explore department stores, boutiques, and galleries, or catch a performance at various theaters. Enjoy the Dewey Monument and stunning views from nearby hotels. Easily accessible via cable car lines, buses, and subway systems.

Fisherman's Wharf

Discover Pier 39, Ghirardelli Square, and the San Francisco Maritime National Historical Park in this bustling tourist hotspot. Savor seafood at family-owned restaurants and explore the sea lion colony, while enjoying convenient cable car access.

Downtown San Francisco

Serving as San Francisco's central business district, this area boasts Northern California's two tallest buildings, the Salesforce Tower and Transamerica Pyramid. Explore shopping malls like the Embarcadero Center and enjoy parks such as Sue Biermann Park, all easily accessible via Muni bus and rail lines.

South of Market

From baseball games to top-notch art exhibits, find endless entertainment in one of San Francisco’s fastest-growing neighborhoods.

Nob Hill

Luxury hotels, historic mansions, and Michelin-starred restaurants abound in this upscale area. Explore Union Square shopping district, Grace Cathedral, and the SF Masonic Auditorium for a taste of culture and history.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
Travelers will be sure to enjoy their time in San Francisco's Mission Bay neighborhood. Be sure to check out Chase Center and Lefty O'Doul Bridge as part of your Mission Bay travel plans.
Where is the best place to stay in Mission Bay?
Based on our traveler data, LUMA Hotel San Francisco is one of the top choices for your stay in Mission Bay. This hotel is a short 5-minute walk from Oracle Park, and it offers a restaurant and a fitness center.
How many hotels are there in Mission Bay?
When you want to kick up your feet after a day of exploring the sights in San Francisco, you can choose from 14 Expedia hotels and other accommodations in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel room reservations are fully refundable if you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If your reservation is non-refundable, you may still be able to cancel and receive a refund within a 24-hour period of booking. Put your dates in and click on "Search", then filter by "fully refundable" to get the best deals in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To access more information about changing or cancelling your trip to Mission Bay, head over to our customer service page.
What are the top things to see and do in Mission Bay?
Chase Center, Lefty O'Doul Bridge, and Lucky Strike San Francisco are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station, or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.