Find hotels near Mission Bay, San Diego from ₩89,430

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Our top choices for Mission Bay hotels

2 outdoor pools, a heated pool, sun loungers
The Dana on Mission Bay

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.7 km from Mission Bay
9.0 out of 10, Wonderful, (3937)
"Always love staying here. Staff was very courteous and the rooms very clean. "
United States
Eric
The price is ₩205,730
₩266,078 total
includes taxes & fees
Jan 4 - Jan 5, 2026
The Dana on Mission Bay
Living area
ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (201)
"great location and free parking available across the street. "
United States
Saquib
ITH Mission Beach Backpacker Hostel
Luxury Suite, 2 Bedrooms, Patio, Ocean View | Individually decorated, individually furnished, free WiFi, bed sheets
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (270)
"Love the layout! Room was spacious and clean! Full kitchenette made it very convenient!"
United States
evan
The price is ₩234,976
₩264,936 total
includes taxes & fees
Jan 12 - Jan 13, 2026
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
Property grounds
Paradise Point Resort & Spa

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.2 km from Mission Bay
8.6 out of 10, Excellent, (2357)
"Great stay, top tier service and excellent customer care "
Canada
Meriem
The price is ₩191,447
₩298,382 total
includes taxes & fees
Jan 11 - Jan 12, 2026
Paradise Point Resort & Spa
Outdoor pool, a heated pool
The Wayfarer San Diego

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1719)
"Great room, clean and updated property, exceptional service, perfect location. Loved our stay and can't wait to return. "
United States
Michelle
The price is ₩287,504
₩330,485 total
includes taxes & fees
Dec 24 - Dec 25
The Wayfarer San Diego
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (433)
"Clean rooms, friendly staff."
United States
KARLA
The price is ₩149,709
₩172,082 total
includes taxes & fees
Dec 30 - Dec 31
Hampton Inn & Suites by Hilton San Diego SeaWorld
Lobby
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (809)
"Good location, good basic breakfast, good parking, recommended. "
United States
Leyla
The price is ₩152,181
₩174,924 total
includes taxes & fees
Jan 3 - Jan 4, 2026
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
On the beach
The Beach Cottages

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1000)
"Staff was very helpful, place was clean, fun with all the Xmas bars and restaurants."
United States
Gay Marie
The price is ₩185,009
₩212,657 total
includes taxes & fees
Jan 4 - Jan 5, 2026
The Beach Cottages
Outdoor pool, open 7:00 AM to 10:00 PM, cabanas (surcharge)
San Diego Mission Bay Resort

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.6 km from Mission Bay
8.4 out of 10, Very Good, (1312)
"Room was super clean and updated, location up against the bay was perfect. We really enjoyed our stay and want to come back soon!"
United States
Haley
The price is ₩217,955
₩317,268 total
includes taxes & fees
Jan 1 - Jan 2, 2026
San Diego Mission Bay Resort
Suite, Multiple Beds | In-room safe, desk, laptop workspace, blackout drapes
Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1002)
"Friendly staff at check in and clean room/hotel "
United States
Stefanie
The price is ₩187,969
₩216,061 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Holiday Inn Express San Diego - SeaWorld Area by IHG
In-room safe, desk, blackout drapes, iron/ironing board
Bahia Resort Hotel

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1819)
"Friendly staff and beautiful property "
United States
Cherron
The price is ₩187,450
₩297,879 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Bahia Resort Hotel
Exterior
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very Good, (1582)
"Loved our stay "
United States
Jeremy
The price is ₩187,821
₩294,202 total
includes taxes & fees
Jan 10 - Jan 11, 2026
Hyatt Regency Mission Bay Spa and Marina
Standard Room, 2 Queen Beds, Non Smoking | In-room safe, desk, laptop workspace, blackout drapes
Comfort Inn Sea World Area

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3166)
"good hotel "
United States
Lala
The price is ₩125,806
₩144,607 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Comfort Inn Sea World Area
Fishing
Surfer Beach Hotel

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very Good, (1181)
"Great views! Service was great and friendly. Great place for families and convenient next to stores, restaurants and beach walk."
United States
DONALD
The price is ₩204,250
₩230,690 total
includes taxes & fees
Jan 4 - Jan 5, 2026
Surfer Beach Hotel
Standard Room, 2 Queen Beds | Pillowtop beds, individually decorated, individually furnished, desk
GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1880)
"Clean room and staff was very nice. "
United States
Jerry
The price is ₩142,415
₩163,699 total
includes taxes & fees
Jan 21 - Jan 22, 2026
GreenTree Inn San Diego Mission Bay
Desk, laptop workspace, blackout drapes, iron/ironing board
SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very Good, (1427)
"our stay was great and staff was supportive..."
United States
Ramesh
The price is ₩117,207
₩132,379 total
includes taxes & fees
Jan 4 - Jan 5, 2026
SureStay Hotel by Best Western San Diego Pacific Beach
Sundeck
ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very Good, (254)
"Everyone was so cool and welcoming"
United States
noah
The price is ₩137,469
₩154,993 total
includes taxes & fees
Dec 24 - Dec 25
ITH Beach Bungalow Surf Hostel
View from room
Catamaran Resort and Spa

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1113)
"Great place to vacation. "
United States
Manuel
The price is ₩224,496
₩337,089 total
includes taxes & fees
Dec 31 - Jan 1, 2026
Catamaran Resort and Spa
Front of property
Heritage Inn San Diego

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1175)
"Clean room, great location "
United States
Benjamin
The price is ₩77,803
₩89,430 total
includes taxes & fees
Dec 24 - Dec 25
Heritage Inn San Diego
Lobby
Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4119)
"Room was very clean and staff very pleasant "
Canada
Brian
The price is ₩131,726
₩151,413 total
includes taxes & fees
Dec 24 - Dec 25
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Mission Bay Hotel Reviews

San Diego Mission Bay Resort

San Diego Mission Bay Resort

10/10 Excellent
"Staff and room "
Hunter 1-night trip
Posted 2 days ago
San Diego Mission Bay Resort

Hotels near other Mission Bay attractions

Mission Bay Park

4.4/5 (165 reviews)
Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area, or enjoy its surfing spots.
See properties

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 44 hotels and other accommodations you'll find within a mile.
Where is the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveler data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.7 mi (1.2 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 1 mi (1.6 km) away.
How many hotels can I expect to find close to Mission Bay?
Expedia has 44 hotels and other accommodations within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.
Where can I learn more about changing or cancelling my trip in the area near Mission Bay?
For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum, or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.